-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathreferences.bib
446 lines (416 loc) · 14.4 KB
/
references.bib
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
@article{bandyopadhyay2010,
title = {Rewiring of Genetic Networks in Response to DNA Damage},
author = {Bandyopadhyay, Sourav and Mehta, Monika and Kuo, Dwight and Sung, Min-Kyung and Chuang, Ryan and Jaehnig, Eric J. and Bodenmiller, Bernd and Licon, Katherine and Copeland, Wilbert and Shales, Michael and Fiedler, Dorothea and Dutkowski, Janusz and {Guénolé}, Aude and van Attikum, Haico and Shokat, Kevan M. and Kolodner, Richard D. and Huh, Won-Ki and Aebersold, Ruedi and Keogh, Michael-Christopher and Krogan, Nevan J. and Ideker, Trey},
year = {2010},
month = {12},
date = {2010-12-03},
journal = {Science},
pages = {1385--1389},
volume = {330},
number = {6009},
doi = {10.1126/science.1195618},
url = {http://dx.doi.org/10.1126/science.1195618},
langid = {en}
}
@article{bandyopadhyay2010,
title = {Rewiring of Genetic Networks in Response to DNA Damage},
author = {Bandyopadhyay, Sourav and Mehta, Monika and Kuo, Dwight and Sung, Min-Kyung and Chuang, Ryan and Jaehnig, Eric J. and Bodenmiller, Bernd and Licon, Katherine and Copeland, Wilbert and Shales, Michael and Fiedler, Dorothea and Dutkowski, Janusz and {Guénolé}, Aude and van Attikum, Haico and Shokat, Kevan M. and Kolodner, Richard D. and Huh, Won-Ki and Aebersold, Ruedi and Keogh, Michael-Christopher and Krogan, Nevan J. and Ideker, Trey},
year = {2010},
month = {12},
date = {2010-12-03},
journal = {Science},
pages = {1385--1389},
volume = {330},
number = {6009},
doi = {10.1126/science.1195618},
url = {http://dx.doi.org/10.1126/science.1195618},
langid = {en}
}
@article{blondel2008,
title = {Fast unfolding of communities in large networks},
author = {Blondel, Vincent D and Guillaume, Jean-Loup and Lambiotte, Renaud and Lefebvre, Etienne},
year = {2008},
month = {10},
date = {2008-10-09},
journal = {Journal of Statistical Mechanics: Theory and Experiment},
pages = {P10008},
volume = {2008},
number = {10},
doi = {10.1088/1742-5468/2008/10/p10008},
url = {http://dx.doi.org/10.1088/1742-5468/2008/10/P10008}
}
@article{suter2008,
title = {Two-hybrid technologies in proteomics research},
author = {Suter, Bernhard and Kittanakom, Saranya and Stagljar, Igor},
year = {2008},
month = {08},
date = {2008-08},
journal = {Current Opinion in Biotechnology},
pages = {316--323},
volume = {19},
number = {4},
doi = {10.1016/j.copbio.2008.06.005},
url = {http://dx.doi.org/10.1016/j.copbio.2008.06.005},
langid = {en}
}
@article{vallabhajosyula2009,
title = {Identifying Hubs in Protein Interaction Networks},
author = {Vallabhajosyula, Ravishankar R. and Chakravarti, Deboki and Lutfeali, Samina and Ray, Animesh and Raval, Alpan},
editor = {Di Bernardo, Diego},
year = {2009},
month = {04},
date = {2009-04-28},
journal = {PLoS ONE},
pages = {e5344},
volume = {4},
number = {4},
doi = {10.1371/journal.pone.0005344},
url = {http://dx.doi.org/10.1371/journal.pone.0005344},
langid = {en}
}
@article{vallabhajosyula2009a,
title = {Identifying Hubs in Protein Interaction Networks},
author = {Vallabhajosyula, Ravishankar R. and Chakravarti, Deboki and Lutfeali, Samina and Ray, Animesh and Raval, Alpan},
editor = {Di Bernardo, Diego},
year = {2009},
month = {04},
date = {2009-04-28},
journal = {PLoS ONE},
pages = {e5344},
volume = {4},
number = {4},
doi = {10.1371/journal.pone.0005344},
url = {http://dx.doi.org/10.1371/journal.pone.0005344},
langid = {en}
}
@article{madkour2021,
title = {Current status and future prospects of p38α/MAPK14 kinase and its inhibitors},
author = {Madkour, Moustafa M. and Anbar, Hanan S. and El-Gamal, Mohammed I.},
year = {2021},
month = {03},
date = {2021-03},
journal = {European Journal of Medicinal Chemistry},
pages = {113216},
volume = {213},
doi = {10.1016/j.ejmech.2021.113216},
url = {http://dx.doi.org/10.1016/j.ejmech.2021.113216},
langid = {en}
}
@article{teng2007,
title = {Several Dual Specificity Phosphatases Coordinate to Control the Magnitude and Duration of JNK Activation in Signaling Response to Oxidative Stress},
author = {Teng, Chun-Hung and Huang, Wen-Nin and Meng, Tzu-Ching},
year = {2007},
month = {09},
date = {2007-09},
journal = {Journal of Biological Chemistry},
pages = {28395--28407},
volume = {282},
number = {39},
doi = {10.1074/jbc.m705142200},
url = {http://dx.doi.org/10.1074/jbc.M705142200},
langid = {en}
}
@article{matsumoto2021,
title = {HIVEP1 Is a Negative Regulator of NF-κB That Inhibits Systemic Inflammation in Sepsis},
author = {Matsumoto, Hisatake and Scicluna, Brendon P. and Jim, Kin Ki and Falahi, Fahimeh and Qin, Wanhai and {Gürkan}, Berke and {Malmström}, Erik and Meijer, Mariska T. and Butler, Joe M. and Khan, Hina N. and Takagi, Tsuyoshi and Ishii, Shunsuke and Schultz, Marcus J. and van de Beek, Diederik and de Vos, Alex F. and {van {\textquoteleft}t Veer}, Cornelis and van der Poll, Tom},
year = {2021},
month = {11},
date = {2021-11-05},
journal = {Frontiers in Immunology},
volume = {12},
doi = {10.3389/fimmu.2021.744358},
url = {http://dx.doi.org/10.3389/fimmu.2021.744358}
}
@article{bentebibel2019,
title = {A First-in-Human Study and Biomarker Analysis of NKTR-214, a Novel IL2Rβγ-Biased Cytokine, in Patients with Advanced or Metastatic Solid Tumors},
author = {Bentebibel, Salah-Eddine and Hurwitz, Michael E. and Bernatchez, Chantale and Haymaker, Cara and Hudgens, Courtney W. and Kluger, Harriet M. and Tetzlaff, Michael T. and Tagliaferri, Mary A. and Zalevsky, Jonathan and Hoch, Ute and Fanton, Christie and Aung, Sandra and Hwu, Patrick and Curti, Brendan D. and Tannir, Nizar M. and Sznol, Mario and Diab, Adi},
year = {2019},
month = {06},
date = {2019-06-01},
journal = {Cancer Discovery},
pages = {711--721},
volume = {9},
number = {6},
doi = {10.1158/2159-8290.cd-18-1495},
url = {http://dx.doi.org/10.1158/2159-8290.CD-18-1495},
langid = {en}
}
@article{bignone2006,
title = {RPS6KA2, a putative tumour suppressor gene at 6q27 in sporadic epithelial ovarian cancer},
author = {Bignone, P A and Lee, K Y and Liu, Y and Emilion, G and Finch, J and Soosay, A E R and Charnock, F M L and Beck, S and Dunham, I and Mungall, A J and Ganesan, T S},
year = {2006},
month = {07},
date = {2006-07-31},
journal = {Oncogene},
pages = {683--700},
volume = {26},
number = {5},
doi = {10.1038/sj.onc.1209827},
url = {http://dx.doi.org/10.1038/sj.onc.1209827},
langid = {en}
}
@article{bignone2006a,
title = {RPS6KA2, a putative tumour suppressor gene at 6q27 in sporadic epithelial ovarian cancer},
author = {Bignone, P A and Lee, K Y and Liu, Y and Emilion, G and Finch, J and Soosay, A E R and Charnock, F M L and Beck, S and Dunham, I and Mungall, A J and Ganesan, T S},
year = {2006},
month = {07},
date = {2006-07-31},
journal = {Oncogene},
pages = {683--700},
volume = {26},
number = {5},
doi = {10.1038/sj.onc.1209827},
url = {http://dx.doi.org/10.1038/sj.onc.1209827},
langid = {en}
}
@article{choi2015,
title = {Frameshift mutations in mammalian target of rapamycin pathway genes and their regional heterogeneity in sporadic colorectal cancers},
author = {Choi, Mi Ryoung and Yoo, Nam Jin and An, Chang Hyeok and Lee, Sug Hyung},
year = {2015},
month = {05},
date = {2015-05},
journal = {Human Pathology},
pages = {753--760},
volume = {46},
number = {5},
doi = {10.1016/j.humpath.2015.01.017},
url = {http://dx.doi.org/10.1016/j.humpath.2015.01.017},
langid = {en}
}
@article{kim2015,
title = {sMEK1 inhibits endothelial cell proliferation by attenuating VEGFR-2-dependent-Akt/eNOS/HIF-1α signaling pathways},
author = {Kim, Boh-Ram and Seo, Seung Hee and Park, Mi Sun and Lee, Seung-Hoon and Kwon, Youngjoo and Rho, Seung Bae},
year = {2015},
month = {09},
date = {2015-09-10},
journal = {Oncotarget},
pages = {31830--31843},
volume = {6},
number = {31},
doi = {10.18632/oncotarget.5570},
url = {http://dx.doi.org/10.18632/oncotarget.5570},
langid = {en}
}
@article{feng2006,
title = {Filamin A (FLNA) is required for cell{\textendash}cell contact in vascular development and cardiac morphogenesis},
author = {Feng, Yuanyi and Chen, Ming Hui and Moskowitz, Ivan P. and Mendonza, Ashley M. and Vidali, Luis and Nakamura, Fumihiko and Kwiatkowski, David J. and Walsh, Christopher A.},
year = {2006},
month = {12},
date = {2006-12-26},
journal = {Proceedings of the National Academy of Sciences},
pages = {19836--19841},
volume = {103},
number = {52},
doi = {10.1073/pnas.0609628104},
url = {http://dx.doi.org/10.1073/pnas.0609628104},
langid = {en}
}
@article{firat-karalar2014,
title = {Proximity Interactions among Centrosome Components Identify Regulators of Centriole Duplication},
author = {Firat-Karalar, {Elif Nur} and Rauniyar, Navin and Yates, {John R.} and Stearns, Tim},
year = {2014},
month = {03},
date = {2014-03},
journal = {Current Biology},
pages = {664--670},
volume = {24},
number = {6},
doi = {10.1016/j.cub.2014.01.067},
url = {http://dx.doi.org/10.1016/j.cub.2014.01.067},
langid = {en}
}
@article{hannula-jouppi2005,
title = {The Axon Guidance Receptor Gene ROBO1 Is a Candidate Gene for Developmental Dyslexia},
author = {Hannula-Jouppi, Katariina and Kaminen-Ahola, Nina and Taipale, Mikko and Eklund, Ranja and Nopola-Hemmi, Jaana and {Kääriäinen}, Helena and Kere, Juha},
editor = {Flint, Jonathan},
year = {2005},
month = {10},
date = {2005-10-28},
journal = {PLoS Genetics},
pages = {e50},
volume = {1},
number = {4},
doi = {10.1371/journal.pgen.0010050},
url = {http://dx.doi.org/10.1371/journal.pgen.0010050},
langid = {en}
}
@article{tari2001,
title = {GRB2: A pivotal protein in signal transduction},
author = {TARI, A},
year = {2001},
month = {10},
date = {2001-10},
journal = {Seminars in Oncology},
pages = {142--147},
volume = {28},
doi = {10.1016/s0093-7754(01)90291-x},
url = {http://dx.doi.org/10.1016/S0093-7754(01)90291-X},
langid = {en}
}
@article{przulj2004,
title = {Modeling interactome: scale-free or geometric?},
author = {{Pr{\v{z}}ulj}, N. and Corneil, D. G. and Jurisica, I.},
year = {2004},
month = {07},
date = {2004-07-29},
journal = {Bioinformatics},
pages = {3508--3515},
volume = {20},
number = {18},
doi = {10.1093/bioinformatics/bth436},
url = {http://dx.doi.org/10.1093/bioinformatics/bth436},
langid = {en}
}
@article{barabási2004,
title = {Network biology: understanding the cell's functional organization},
author = {{Barabási}, {Albert-László} and Oltvai, {Zoltán N.}},
year = {2004},
month = {02},
date = {2004-02},
journal = {Nature Reviews Genetics},
pages = {101--113},
volume = {5},
number = {2},
doi = {10.1038/nrg1272},
url = {http://dx.doi.org/10.1038/nrg1272},
langid = {en}
}
@article{barabási2004a,
title = {Network biology: understanding the cell's functional organization},
author = {{Barabási}, {Albert-László} and Oltvai, {Zoltán N.}},
year = {2004},
month = {02},
date = {2004-02},
journal = {Nature Reviews Genetics},
pages = {101--113},
volume = {5},
number = {2},
doi = {10.1038/nrg1272},
url = {http://dx.doi.org/10.1038/nrg1272},
langid = {en}
}
@article{opsahl2010,
title = {Node centrality in weighted networks: Generalizing degree and shortest paths},
author = {Opsahl, Tore and Agneessens, Filip and Skvoretz, John},
year = {2010},
month = {07},
date = {2010-07},
journal = {Social Networks},
pages = {245--251},
volume = {32},
number = {3},
doi = {10.1016/j.socnet.2010.03.006},
url = {http://dx.doi.org/10.1016/j.socnet.2010.03.006},
langid = {en}
}
@article{liu2017,
title = {A comparative study of network robustness measures},
author = {Liu, Jing and Zhou, Mingxing and Wang, Shuai and Liu, Penghui},
year = {2017},
month = {05},
date = {2017-05-26},
journal = {Frontiers of Computer Science},
pages = {568--584},
volume = {11},
number = {4},
doi = {10.1007/s11704-016-6108-z},
url = {http://dx.doi.org/10.1007/s11704-016-6108-z},
langid = {en}
}
@article{albert2000,
title = {Error and attack tolerance of complex networks},
author = {Albert, {Réka} and Jeong, Hawoong and {Barabási}, {Albert-László}},
year = {2000},
month = {07},
date = {2000-07-27},
journal = {Nature},
pages = {378--382},
volume = {406},
number = {6794},
doi = {10.1038/35019019},
url = {http://dx.doi.org/10.1038/35019019},
langid = {en}
}
@article{barabási2004b,
title = {Network biology: understanding the cell's functional organization},
author = {{Barabási}, {Albert-László} and Oltvai, {Zoltán N.}},
year = {2004},
month = {02},
date = {2004-02},
journal = {Nature Reviews Genetics},
pages = {101--113},
volume = {5},
number = {2},
doi = {10.1038/nrg1272},
url = {http://dx.doi.org/10.1038/nrg1272},
langid = {en}
}
@article{barabási2004c,
title = {Network biology: understanding the cell's functional organization},
author = {{Barabási}, {Albert-László} and Oltvai, {Zoltán N.}},
year = {2004},
month = {02},
date = {2004-02},
journal = {Nature Reviews Genetics},
pages = {101--113},
volume = {5},
number = {2},
doi = {10.1038/nrg1272},
url = {http://dx.doi.org/10.1038/nrg1272},
langid = {en}
}
@article{newman2006,
title = {Modularity and community structure in networks},
author = {Newman, M. E. J.},
year = {2006},
month = {06},
date = {2006-06-06},
journal = {Proceedings of the National Academy of Sciences},
pages = {8577--8582},
volume = {103},
number = {23},
doi = {10.1073/pnas.0601602103},
url = {http://dx.doi.org/10.1073/pnas.0601602103},
langid = {en}
}
@article{abbott2023,
title = {The adenomatous polyposis coli protein 30 years on},
author = {Abbott, James and {Näthke}, Inke S.},
year = {2023},
month = {12},
date = {2023-12},
journal = {Seminars in Cell & Developmental Biology},
pages = {28--34},
volume = {150-151},
doi = {10.1016/j.semcdb.2023.04.004},
url = {http://dx.doi.org/10.1016/j.semcdb.2023.04.004},
langid = {en}
}
@article{barabási2004d,
title = {Network biology: understanding the cell's functional organization},
author = {{Barabási}, {Albert-László} and Oltvai, {Zoltán N.}},
year = {2004},
month = {02},
date = {2004-02},
journal = {Nature Reviews Genetics},
pages = {101--113},
volume = {5},
number = {2},
doi = {10.1038/nrg1272},
url = {http://dx.doi.org/10.1038/nrg1272},
langid = {en}
}
@article{barabási2004e,
title = {Network biology: understanding the cell's functional organization},
author = {{Barabási}, {Albert-László} and Oltvai, {Zoltán N.}},
year = {2004},
month = {02},
date = {2004-02},
journal = {Nature Reviews Genetics},
pages = {101--113},
volume = {5},
number = {2},
doi = {10.1038/nrg1272},
url = {http://dx.doi.org/10.1038/nrg1272},
langid = {en}
}