NAMESPACE

# Generated by roxygen2: do not edit by hand

export(aggregate_specs_list)
export(bl_distance_ns)
export(calculate_spec_and_pval)
export(check_pes_inputs)
export(circularize2dist)
export(distcalc)
export(get_ga_defaults)
export(make_nested_set)
export(occ_threshold)
export(onto2nwk)
export(phy_or_env_spec)
export(plot_grid_abunds)
export(plot_pairwise_spec)
export(plot_specs_stacks)
export(plot_specs_violin)
export(prop_abund)
export(random_rep_positions)
export(randomgrid)
export(tips_from_node)
export(tree2mat)
export(wpd)
export(wpd_table)

# Rcpp namespace stuff, added by update_r_package.r
useDynLib(specificity, .registration=TRUE)
exportPattern("^[[:alpha:]]+")
importFrom(Rcpp, evalCpp)

# namespace stuff that's not in BASE R but is in vanilla R (like stats)
# NOTE: PACKAGE WILL WORK FINE WITHOUT THIS, but will fail R CMD check
# To generate (in shell):
#   cd ../
#   R CMD build specificity
#   R CMD check specificity_0.1.0.9000.tar.gz 
# look at specificity.Rcheck/00check.log
# should appear after line "Consider adding".
importFrom("grDevices", "col2rgb", "rgb")
importFrom("graphics", "abline", "axis", "box", "mtext", "par", "plot",
           "polygon", "rect", "segments", "text")
importFrom("stats", "aggregate", "as.dist", "cor", "density", "dgamma",
           "dist", "dnorm", "dunif", "median", "optim", "p.adjust",
           "p.adjust.methods", "pgamma", "rmultinom", "runif", "sd",
           "var", "coef", "lm", "summary.lm")
importFrom("utils", "setTxtProgressBar", "txtProgressBar")