do-configure-mkl-mpi-gcc-linux

#!/bin/bash
#
# Mark Hoemmen <mhoemme AT sandia DOT gov>
# Time-stamp: <2012-08-08 18:21:14 mhoemme>
#
# Example CMake configure script for Trilinos, that uses Intel's Math
# Kernel Library (MKL) both for the BLAS and LAPACK implementation,
# and as a separate MKL TPL (Third-Party Library).  Specifically, in
# this case, we're using the MKL for its sparse matrix kernels.  Here
# are other details of my configuration:
#
# Operating system: GNU/Linux
# Compiler: gcc (version 4.5.1, user-space installation)
# MPI version: OpenMPI 1.4.3 (user-space installation)
# Other TPLs: 
# - Pthread (required for my MKL configuration), 
# - Boost (optional, version 1.50.0, user-space installation)
# - OpenMP (optional)
#
# I've chosen the single dynamic library way to link with MKL:
#
# http://software.intel.com/en-us/articles/a-new-linking-model-single-dynamic-library-mkl_rt-since-intel-mkl-103/
#
# I highly recommend this approach if you are able to use dynamic
# libraries on your system.
######################################################################


# Script magic to pull in my user-space install of gcc.
concat_path () {
    if ! echo $PATH | /bin/egrep -q "(^|:)$1($|:)" ; then
	if [ "$2" = "after" ] ; then
	    PATH=$PATH:$1
	else
	    PATH=$1:$PATH
	fi
    fi
    export PATH
}

# Script magic to pull in my user-space install of gcc.
concat_ld_library_path () {
    if ! echo $LD_LIBRARY_PATH | /bin/egrep -q "(^|:)$1($|:)" ; then
	if [ "$2" = "after" ] ; then
	    LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$1
	else
	    LD_LIBRARY_PATH=$1:$LD_LIBRARY_PATH
	fi
    fi
    export LD_LIBRARY_PATH
}

# Script magic to pull in my user-space install of gcc.
# For some odd reason, the exports don't escape this script.
if [ -d $HOME/pkg/gcc-4.5.1/lib64 ]; then
    concat_ld_library_path $HOME/pkg/gcc-4.5.1/lib64
else
    concat_ld_library_path $HOME/pkg/gcc-4.5.1/lib
fi
concat_path $HOME/pkg/gcc-4.5.1/bin

# Pull in any extra arguments given to this script.
# Treat them as extra CMake options.
EXTRA_ARGS=$@

# Root directory of the Intel MKL install.  For details on how to link
# with MKL, see the MKL Link Line Advisor:
#
# http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
#
# Also refer to the documentation in
# <TrilinosSource>/cmake/TPLs/FindTPLMKL.cmake, where <TrilinosSource>
# is the root directory of your Trilinos source tree.
MKLROOT=/opt/intel/mkl

# Point to the user-space install of OpenMPI (MPI implementation).
MPI_ROOT=${HOME}/pkg/openmpi-1.4.3
MPI_BIN=$MPI_ROOT/bin

cmake \
  -D BUILD_SHARED_LIBS:BOOL=ON \
  -D CMAKE_BUILD_TYPE:STRING=DEBUG \
  -D CMAKE_INSTALL_PREFIX:FILEPATH="$HOME/pkg/Trilinos/Mpi/Debug/Master" \
  -D TPL_ENABLE_MPI:BOOL=ON \
  -D MPI_BASE_DIR="${HOME}/pkg/openmpi-1.4.3" \
  -D MPI_EXEC:FILEPATH="${HOME}/pkg/openmpi-1.4.3/bin/mpiexec" \
  -D MPI_Fortran_COMPILER:FILEPATH="${MPI_BIN}/mpif90" \
  -D MPI_CXX_COMPILER:FILEPATH="${MPI_BIN}/mpicxx" \
  -D MPI_C_COMPILER:FILEPATH="${MPI_BIN}/mpicc" \
  -D CMAKE_CXX_FLAGS:STRING="-ansi -pedantic -Wall" \
  -D BLAS_LIBRARY_DIRS:FILEPATH="${MKLROOT}/lib/intel64" \
  -D BLAS_LIBRARY_NAMES:STRING="mkl_rt" \
  -D LAPACK_LIBRARY_DIRS:FILEPATH="${MKLROOT}/lib/intel64" \
  -D LAPACK_LIBRARY_NAMES:STRING="mkl_rt" \
  -D TPL_ENABLE_MKL:BOOL=ON \
  -D MKL_LIBRARY_DIRS:FILEPATH="${MKLROOT}/lib/intel64" \
  -D MKL_LIBRARY_NAMES:STRING="mkl_rt" \
  -D MKL_INCLUDE_DIRS:FILEPATH="${MKLROOT}/include" \
  -D Trilinos_ENABLE_OpenMP:BOOL=ON \
  -D TPL_ENABLE_Pthread:BOOL=ON \
  -D TPL_ENABLE_Boost:BOOL=ON \
  -D Boost_LIBRARY_DIRS:FILEPATH="${HOME}/pkg/boost/lib" \
  -D Boost_INCLUDE_DIRS:FILEPATH="${HOME}/pkg/boost/include" \
  -D DART_TESTING_TIMEOUT:STRING=600 \
  -D Trilinos_ENABLE_TESTS:BOOL=ON \
  -D Trilinos_ENABLE_DEBUG:BOOL=ON \
  -D Trilinos_ENABLE_Epetra:BOOL=OFF \
  -D Trilinos_ENABLE_Teuchos:BOOL=ON \
  -D Teuchos_ENABLE_COMPLEX:BOOL=ON \
  -D Teuchos_ENABLE_EXAMPLES:BOOL=ON \
  -D Teuchos_ENABLE_TESTS:BOOL=ON \
  -D Trilinos_ENABLE_Kokkos:BOOL=ON \
  -D Kokkos_ENABLE_EXAMPLES:BOOL=ON \
  -D Kokkos_ENABLE_TESTS:BOOL=ON \
  -D Kokkos_ENABLE_TSQR:BOOL=ON \
  -D TSQR_ENABLE_Fortran:BOOL=ON \
  -D Trilinos_ENABLE_Tpetra:BOOL=ON \
  -D Tpetra_ENABLE_TESTS:BOOL=ON \
  -D Tpetra_ENABLE_BUGTESTS:BOOL=OFF \
  -D Tpetra_ENABLE_EXAMPLES:BOOL=ON \
  -D Tpetra_ENABLE_RTI:BOOL=OFF \
  -D Tpetra_PRINT_Efficiency_Warnings:BOOL=ON \
  $EXTRA_ARGS \
  ..