LF.7.1 + S:T572I (73, >10 Places)

[FedeGueli]

This was fromerly known as Branch 4 of sars-cov-2-variants/lineage-proposals#2215
Initially we tracked just the T493C branch , then Usher added some recent sample without it starting directly from the S:T572I node ,as @xz-keg analyzed. this creates unfortunately the need to use a double query for this lineage one excluding the 493C samples and all the convergent appearance of LF.71. and the other the original T493C+ T572i query

LF.7.1 >> S:T572I (C23277T) > T493C
Double Query:
C6310T,C23277T,C8818T,-T493C,-A3398G, -C4068T,-C25006T,-C25671T,-G4354A,-A798G,-T20040C,-C2048T,-A3008G,-C583T,-C3828T,-G3939T,-6525T
PLUS
T493C,C23277T, C7869T
Samples:17
Places: 9 [ Slovenia, US, Sweden, England,Poland,France, Finland, Netherlands, Singapore]
Query for S:Q690P branch (by @xz-keg ) : C6310T,C23277T,C8818T,A23631C,
Samples: 14
Places: US (3 States)
Tree (updated on March 24):
https://nextstrain.org/fetch/genome.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_11e421_1e4f80.json?label=id:node_7153457

IDs List ( with both 493C and 493T to avoid issues during designation eventually):
EPI_ISL_19658646, EPI_ISL_19664058, EPI_ISL_19666744,
EPI_ISL_19485019, EPI_ISL_19485035, EPI_ISL_19527136,
EPI_ISL_19550733, EPI_ISL_19575726, EPI_ISL_19624325,
EPI_ISL_19631425, EPI_ISL_19632487, EPI_ISL_19633180,
EPI_ISL_19646294, EPI_ISL_19646548, EPI_ISL_19650840,
EPI_ISL_19669981, EPI_ISL_19671470

[FedeGueli]

+2 in the non 493C branch one from Singapore the other from Portugal new country

[FedeGueli]

+1 NY

[FedeGueli]

10+17 gives 27 with new samples from Slovenia and Finland

[FedeGueli]

+2 IL

[FedeGueli]

27 total with new query with more -s

[FedeGueli]

33 now France Chile and a cluster with S:Q690P in Us

ping @corneliusroemer it seems 572I workjs very well with LF.7 backbone (without 475V though)

[FedeGueli]

39 now

[xz-keg]

There seems to be a S:Q690P sub-branch emerging. Query: C6310T,C23277T,C8818T,A23631C, 14 seqs

[FedeGueli]

There seems to be a S:Q690P sub-branch emerging. Query: C6310T,C23277T,C8818T,A23631C, 14 seqs

Thx i was tracking it with A23631C,C26750T,T3565C that catches just 12 mainly in NY! . i will add it to the proposal

note that 4 of them have also S:S112P giving the folowing spike as result:
22N 31P 112P(3) 182R 190S 346T 444R 456L 572I 690P

[FedeGueli]

60 (edited 34+26) , 15 with 690P ,

[FedeGueli]

73