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KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (22, 9 places ) with a S:S31F branch (15, US-5 States ,Dominican Rep., Chile, Uruguay,Canada, Puertorico) #2859

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FedeGueli opened this issue Jan 8, 2025 · 3 comments
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KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (22, 9 places ) with a S:S31F branch (15, US-5 States ,Dominican Rep., Chile, Uruguay,Canada, Puertorico) #2859

FedeGueli opened this issue Jan 8, 2025 · 3 comments

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@FedeGueli
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Transferred from sars-cov-2-variants/lineage-proposals#2252

S:1162X lineages have been tracked in the past by @xz-keg none of them showing a clear advantage , here one popped up likely in Argentina with also trending mutation S:T22N. The last two samples recently showed up with S:S31F in US
Likely not fast but worth tracking it especially in Southern America
Kp.3.3 > ORF1a:A3392V (C10440T) > ORF1a:V4625I (G14137A), S:t22N (C21627A), S:P1162S (C25046T)
Query: C10440T, C21627A,G14137A
Samples: 9 (10 on Usher)
Places: 5 including Argentina and Canary Islands
First : 2024-07-09 Spain
Last: 2024-11-13 Utah
Query for S:S31F branch:G14137A ,C21627A, C25046T,C21654T,-T7270C
Samples: 2 Utah,Dominican Republic
Tree updated as of Jan 8:
Screenshot 2025-01-08 alle 20 14 47
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_test_3e4be_ece550.json?label=id:node_7249425
@FedeGueli FedeGueli mentioned this issue Jan 8, 2025
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@FedeGueli FedeGueli changed the title KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (18, 8 places ) with a S:S31F branch (11, US-5 States ,Dominican Rep., Chile, Uruguay,Canada) KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (19, 8 places ) with a S:S31F branch (12, US-5 States ,Dominican Rep., Chile, Uruguay,Canada) Jan 14, 2025
@FedeGueli
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+1 Ontario

@FedeGueli FedeGueli changed the title KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (19, 8 places ) with a S:S31F branch (12, US-5 States ,Dominican Rep., Chile, Uruguay,Canada) KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (20, 8 places ) with a S:S31F branch (13, US-5 States ,Dominican Rep., Chile, Uruguay,Canada) Jan 20, 2025
@FedeGueli
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20/13 PA US

@FedeGueli FedeGueli changed the title KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (20, 8 places ) with a S:S31F branch (13, US-5 States ,Dominican Rep., Chile, Uruguay,Canada) KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (21, 9 places ) with a S:S31F branch (14, US-5 States ,Dominican Rep., Chile, Uruguay,Canada, Puertorico) Jan 21, 2025
@FedeGueli
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+1 Puerto Rico

@FedeGueli FedeGueli changed the title KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (21, 9 places ) with a S:S31F branch (14, US-5 States ,Dominican Rep., Chile, Uruguay,Canada, Puertorico) KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (22, 9 places ) with a S:S31F branch (15, US-5 States ,Dominican Rep., Chile, Uruguay,Canada, Puertorico) Feb 1, 2025
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