pangolin.md

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pangolin

Phylogenetic Assignment of Named Global Outbreak Lineages

pangolin was developed to implement the dynamic nomenclature of SARS-CoV-2 lineages, known as the Pango nomenclature. It allows a user to assign a SARS-CoV-2 genome sequence the most likely lineage (Pango lineage) to SARS-CoV-2 query sequences.

Command-line tool

GNU General Public License v3.0

Web application

Developed by the Centre for Genomic Pathogen Surveillance.

pangolin documentation

QUICK LINKS
Tutorial
Dependencies
Installation
Updating
Usage
Output
pangoLEARN description
References