Merge pull request #29 from FarahZKhan/patch-9

portah · portah · commit f0b547d16fa2 · 2015-12-02T01:06:41.000-05:00
Update realignTargetCreator.cwl
diff --git a/tools/realignTargetCreator.cwl b/tools/realignTargetCreator.cwl
@@ -1,7 +1,6 @@
 #!/usr/bin/env cwl-runner
 #
 # To use it as stand alone tool - example: "cwltool realignerTargerCreator.cwl realignerTargerCreator.json"
-# Still testing to make it work as a part of the workflow
 #
 # Authors: farahk@student.unimelb.edu.au and skanwal@student.unimelb.edu.au UNIVERSITY OF MELBOURNE
 # Developed for CWL consortium http://commonwl.org/
@@ -20,6 +19,7 @@ description: |
 requirements:
   - import: node-engine.cwl
   - import: envvar-global.cwl
+  - import: gatk-docker.cwl
 
 inputs:
   - id: "#java_arg"

Original file line number	Diff line number	Diff line change
`@@ -1,7 +1,6 @@`
`1`	`1`	`#!/usr/bin/env cwl-runner`
`2`	`2`	`#`
`3`	`3`	`# To use it as stand alone tool - example: "cwltool realignerTargerCreator.cwl realignerTargerCreator.json"`
`4`		`-# Still testing to make it work as a part of the workflow`
`5`	`4`	`#`
`6`	`5`	`# Authors: [email protected] and [email protected] UNIVERSITY OF MELBOURNE`
`7`	`6`	`# Developed for CWL consortium http://commonwl.org/`
`@@ -20,6 +19,7 @@ description: \|`
`20`	`19`	`requirements:`
`21`	`20`	`- import: node-engine.cwl`
`22`	`21`	`- import: envvar-global.cwl`
	`22`	`+ - import: gatk-docker.cwl`
`23`	`23`
`24`	`24`	`inputs:`
`25`	`25`	`- id: "#java_arg"`