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render CWL v1.3.0-dev1 draft (#205)
1 parent dbb7203 commit f8bffb9

6 files changed

+354
-10
lines changed

‎site/cwlsite-job.yaml

+2
Original file line numberDiff line numberDiff line change
@@ -8,8 +8,10 @@ render:
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- {$import: cwlsite-v1.0.0-job.json}
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- {$import: cwlsite-v1.1.0-job.yaml}
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- {$import: cwlsite-v1.2-job.yaml}
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- {$import: cwlsite-v1.3-job.yaml}
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schemas:
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- {$import: cwlsite-draft3-schemas.json}
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- {$import: cwlsite-v1.0.0-schemas.json}
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- {$import: cwlsite-v1.1.0-schemas.yaml}
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- {$import: cwlsite-v1.2-schemas.yaml}
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- {$import: cwlsite-v1.3-schemas.yaml}

‎site/cwlsite-v1.3-job.yaml

+51
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@@ -0,0 +1,51 @@
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- brandimg: '<img src=''../CWL-Logo-Header.png'' style=''height: 61px; margin-top:
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-20px; margin-left: -20px''></img>'
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brandlink: ../index.html
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primtype: null
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redirect: []
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renderlist: []
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source: {class: File, path: ../v1.3/index.md}
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target: v1.3/index.html
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extra: {class: File, path: empty}
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- brandimg: '<img src=''../CWL-Logo-Header.png'' style=''height: 61px; margin-top:
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-20px; margin-left: -20px''></img>'
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brandlink: index.html
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primtype: '#CWLType'
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redirect: []
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renderlist: ['https://w3id.org/cwl/cwl#CommandLineToolDoc', 'https://w3id.org/cwl/cwl#CommandLineTool']
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source:
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class: File
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path: ../v1.3/CommandLineTool-standalone.yml
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secondaryFiles: {$import: v1.3-deps.yaml}
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target: v1.3/CommandLineTool.html
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extra:
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class: File
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path: ../v1.3/cwl-runner.cwl
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- brandimg: '<img src=''../CWL-Logo-Header.png'' style=''height: 61px; margin-top:
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-20px; margin-left: -20px''></img>'
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brandlink: index.html
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primtype: '#CWLType'
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redirect: ['https://w3id.org/cwl/cwl#CommandLineTool=CommandLineTool.html#CommandLineTool',
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'https://w3id.org/cwl/cwl#DockerRequirement=CommandLineTool.html#DockerRequirement',
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'https://w3id.org/cwl/cwl#CreateFileRequirement=CommandLineTool.html#CreateFileRequirement',
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'https://w3id.org/cwl/cwl#EnvVarRequirement=CommandLineTool.html#EnvVarRequirement',
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'https://w3id.org/cwl/cwl#ShellCommandRequirement=CommandLineTool.html#ShellCommandRequirement',
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'https://w3id.org/cwl/cwl#ResourceRequirement=CommandLineTool.html#ResourceRequirement']
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renderlist: ['https://w3id.org/cwl/cwl#WorkflowDoc', 'https://w3id.org/cwl/cwl#Workflow']
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source:
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class: File
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path: ../v1.3/CommonWorkflowLanguage.yml
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secondaryFiles: {$import: v1.3-deps.yaml}
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target: v1.3/Workflow.html
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extra: {class: File, path: empty}
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- brandimg: '<img src=''../CWL-Logo-Header.png'' style=''height: 61px; margin-top:
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-20px; margin-left: -20px''></img>'
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brandlink: index.html
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primtype: null
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redirect: []
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renderlist: ['https://w3id.org/cwl/salad#Semantic_Annotations_for_Linked_Avro_Data',
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'https://w3id.org/cwl/salad#SaladRecordSchema', 'https://w3id.org/cwl/salad#SaladEnumSchema',
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'https://w3id.org/cwl/salad#Documentation']
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source: {$import: v1.3-metaschema.yaml}
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target: v1.3/SchemaSalad.html
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extra: {class: File, path: empty}

‎site/cwlsite-v1.3-schemas.yaml

+11
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@@ -0,0 +1,11 @@
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- context_target: v1.3/cwl-context.json
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rdfs_target: v1.3/cwl.ttl
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graph_target: v1.3/cwl.svg
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schema_in:
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class: File
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path: ../v1.3/CommonWorkflowLanguage.yml
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secondaryFiles: {$import: v1.3-deps.yaml}
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- context_target: v1.3/salad-context.json
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rdfs_target: v1.3/salad.ttl
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graph_target: v1.3/salad.svg
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schema_in: {$import: v1.3-metaschema.yaml}

‎site/v1.3-deps.yaml

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- basename: Process.yml
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class: File
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location: ../v1.3/Process.yml
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secondaryFiles:
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- {basename: concepts.md, class: File, location: ../v1.3/concepts.md}
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- basename: salad
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class: Directory
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listing:
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- basename: schema_salad
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class: Directory
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listing:
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- basename: metaschema
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class: Directory
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listing:
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- {basename: metaschema_base.yml, class: File, location: ../v1.3/salad/schema_salad/metaschema/metaschema_base.yml}
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- basename: CommandLineTool.yml
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class: File
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location: ../v1.3/CommandLineTool.yml
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secondaryFiles:
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- {basename: contrib.md, class: File, location: ../v1.3/contrib.md}
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- {basename: concepts.md, class: File, location: ../v1.3/concepts.md}
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- {basename: invocation.md, class: File, location: ../v1.3/invocation.md}
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- {basename: intro.md, class: File, location: ../v1.3/intro.md}
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- {basename: Base.yml, class: File, location: ../v1.3/Base.yml}
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- basename: Workflow.yml
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class: File
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location: ../v1.3/Workflow.yml
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secondaryFiles:
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- {basename: contrib.md, class: File, location: ../v1.3/contrib.md}
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- {basename: concepts.md, class: File, location: ../v1.3/concepts.md}
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- {basename: intro.md, class: File, location: ../v1.3/intro.md}
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- {basename: Base.yml, class: File, location: ../v1.3/Base.yml}
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- basename: Operation.yml
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class: File
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location: ../v1.3/Operation.yml
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secondaryFiles:
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- {basename: contrib.md, class: File, location: ../v1.3/contrib.md}
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- basename: Base.yml
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class: File
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location: ../v1.3/Base.yml

‎site/v1.3-metaschema.yaml

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@@ -0,0 +1,246 @@
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{
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"class": "File",
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"format": "https://www.iana.org/assignments/media-types/application/cwl",
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"location": "../v1.3/salad/schema_salad/metaschema/metaschema.yml",
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"secondaryFiles": [
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{
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"nameext": ".md",
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"basename": "import_include.md",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/import_include.md",
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"nameroot": "import_include"
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},
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{
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"nameext": ".yml",
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"class": "File",
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"format": "https://www.iana.org/assignments/media-types/application/cwl",
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"location": "../v1.3/salad/schema_salad/metaschema/link_res.yml",
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"basename": "link_res.yml",
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"secondaryFiles": [
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{
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"nameext": ".yml",
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"basename": "link_res_proc.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/link_res_proc.yml",
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"nameroot": "link_res_proc"
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},
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{
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"nameext": ".yml",
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"basename": "link_res_src.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/link_res_src.yml",
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"nameroot": "link_res_src"
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},
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{
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"nameext": ".yml",
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"basename": "link_res_schema.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/link_res_schema.yml",
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"nameroot": "link_res_schema"
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}
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],
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"nameroot": "link_res"
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},
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{
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"nameext": ".yml",
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"class": "File",
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"format": "https://www.iana.org/assignments/media-types/application/cwl",
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"location": "../v1.3/salad/schema_salad/metaschema/ident_res.yml",
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"basename": "ident_res.yml",
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"secondaryFiles": [
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{
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"nameext": ".yml",
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"basename": "ident_res_schema.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/ident_res_schema.yml",
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"nameroot": "ident_res_schema"
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},
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{
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"nameext": ".yml",
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"basename": "ident_res_src.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/ident_res_src.yml",
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"nameroot": "ident_res_src"
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},
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{
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"nameext": ".yml",
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"basename": "ident_res_proc.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/ident_res_proc.yml",
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"nameroot": "ident_res_proc"
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}
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],
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"nameroot": "ident_res"
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},
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{
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"nameext": ".yml",
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"class": "File",
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"format": "https://www.iana.org/assignments/media-types/application/cwl",
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"location": "../v1.3/salad/schema_salad/metaschema/field_name.yml",
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"basename": "field_name.yml",
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"secondaryFiles": [
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{
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"nameext": ".yml",
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"basename": "field_name_proc.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/field_name_proc.yml",
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"nameroot": "field_name_proc"
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},
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{
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"nameext": ".yml",
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"basename": "field_name_schema.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/field_name_schema.yml",
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"nameroot": "field_name_schema"
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},
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{
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"nameext": ".yml",
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"basename": "field_name_src.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/field_name_src.yml",
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"nameroot": "field_name_src"
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}
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],
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"nameroot": "field_name"
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},
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{
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"nameext": ".yml",
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"class": "File",
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"format": "https://www.iana.org/assignments/media-types/application/cwl",
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"location": "../v1.3/salad/schema_salad/metaschema/sfdsl_res.yml",
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"basename": "sfdsl_res.yml",
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"secondaryFiles": [
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{
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"nameext": ".yml",
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"basename": "sfdsl_res_src.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/sfdsl_res_src.yml",
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"nameroot": "sfdsl_res_src"
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},
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{
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"nameext": ".yml",
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"basename": "sfdsl_res_schema.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/sfdsl_res_schema.yml",
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"nameroot": "sfdsl_res_schema"
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},
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{
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"nameext": ".yml",
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"basename": "sfdsl_res_proc.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/sfdsl_res_proc.yml",
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"nameroot": "sfdsl_res_proc"
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}
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],
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"nameroot": "sfdsl_res"
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},
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{
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"nameext": ".yml",
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"class": "File",
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"format": "https://www.iana.org/assignments/media-types/application/cwl",
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"location": "../v1.3/salad/schema_salad/metaschema/typedsl_res.yml",
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"basename": "typedsl_res.yml",
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"secondaryFiles": [
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{
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"nameext": ".yml",
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"basename": "typedsl_res_schema.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/typedsl_res_schema.yml",
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"nameroot": "typedsl_res_schema"
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},
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{
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"nameext": ".yml",
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"basename": "typedsl_res_src.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/typedsl_res_src.yml",
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"nameroot": "typedsl_res_src"
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},
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{
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"nameext": ".yml",
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"basename": "typedsl_res_proc.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/typedsl_res_proc.yml",
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"nameroot": "typedsl_res_proc"
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}
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],
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"nameroot": "typedsl_res"
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},
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{
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"nameext": ".yml",
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"class": "File",
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"format": "https://www.iana.org/assignments/media-types/application/cwl",
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"location": "../v1.3/salad/schema_salad/metaschema/map_res.yml",
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"basename": "map_res.yml",
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"secondaryFiles": [
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{
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"nameext": ".yml",
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"basename": "map_res_src.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/map_res_src.yml",
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"nameroot": "map_res_src"
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},
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{
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"nameext": ".yml",
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"basename": "map_res_schema.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/map_res_schema.yml",
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"nameroot": "map_res_schema"
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},
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{
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"nameext": ".yml",
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"basename": "map_res_proc.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/map_res_proc.yml",
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"nameroot": "map_res_proc"
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}
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],
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"nameroot": "map_res"
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},
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{
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"nameext": ".md",
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"basename": "salad.md",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/salad.md",
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"nameroot": "salad"
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},
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{
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"nameext": ".yml",
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"class": "File",
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"format": "https://www.iana.org/assignments/media-types/application/cwl",
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"location": "../v1.3/salad/schema_salad/metaschema/vocab_res.yml",
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"basename": "vocab_res.yml",
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"secondaryFiles": [
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{
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"nameext": ".yml",
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"basename": "vocab_res_proc.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/vocab_res_proc.yml",
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"nameroot": "vocab_res_proc"
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},
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{
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"nameext": ".yml",
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"basename": "vocab_res_src.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/vocab_res_src.yml",
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"nameroot": "vocab_res_src"
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},
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{
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"nameext": ".yml",
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"basename": "vocab_res_schema.yml",
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"class": "File",
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"location": "../v1.3/salad/schema_salad/metaschema/vocab_res_schema.yml",
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"nameroot": "vocab_res_schema"
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}
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],
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"nameroot": "vocab_res"
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},
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{
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"nameext": ".yml",
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"class": "File",
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"format": "https://www.iana.org/assignments/media-types/application/cwl",
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"location": "../v1.3/salad/schema_salad/metaschema/metaschema_base.yml",
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"basename": "metaschema_base.yml",
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"nameroot": "metaschema_base"
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}
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]
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}

‎website.sh

+4-10
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@@ -5,6 +5,8 @@ set -x
55

66
for repo in https://github.com/common-workflow-language/common-workflow-language \
77
https://github.com/common-workflow-language/cwl-v1.1 \
8+
https://github.com/common-workflow-language/cwl-v1.2 \
9+
https://github.com/common-workflow-language/cwl-v1.3 \
810
https://github.com/common-workflow-lab/cwl-novice-tutorial ; do
911
bn=$(basename $repo)
1012
if [[ -d $bn ]] ; then
@@ -14,20 +16,12 @@ for repo in https://github.com/common-workflow-language/common-workflow-language
1416
fi
1517
done
1618

17-
repo=https://github.com/common-workflow-language/cwl-v1.2 \
18-
bn=$(basename $repo)
19-
if [[ -d $bn ]] ; then
20-
(cd $bn && git fetch origin && git reset --hard origin/main)
21-
else
22-
git clone $repo && pushd $bn; git checkout main ; git show --no-patch ; popd
23-
fi
24-
25-
26-
rm -rf draft-3 v1.0 v1.1 v1.2
19+
rm -rf draft-3 v1.0 v1.1 v1.2 v1.3
2720
ln -s common-workflow-language/draft-3 draft-3
2821
ln -s common-workflow-language/v1.0 v1.0
2922
ln -s cwl-v1.1 v1.1
3023
ln -s cwl-v1.2 v1.2
24+
ln -s cwl-v1.3 v1.3
3125

3226
if [[ -z "$WORKSPACE" ]] ; then
3327
WORKSPACE=$PWD

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