add github actions for checks and pkgdown

Author: dajmcdon

.Rbuildignore

@@ -3,3 +3,7 @@
 ^data-raw$
 ^LICENSE\.md$
 ^README\.Rmd$
+^\.github$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,29 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2

.github/workflows/pkgdown.yaml

@@ -0,0 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -3,3 +3,4 @@
 .RData
 .Ruserdata
 .DS_Store
+docs

DESCRIPTION

@@ -28,3 +28,4 @@ Remotes:
 Encoding: UTF-8
 LazyData: true
 RoxygenNote: 7.2.3
+URL: https://cmu-delphi.github.io/epidatasets/

README.Rmd

@@ -16,6 +16,7 @@ knitr::opts_chunk$set(
 # epidatasets
 
 <!-- badges: start -->
+[![R-CMD-check](https://github.com/cmu-delphi/epidatasets/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/cmu-delphi/epidatasets/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 This package contains data sets used to compile vignettes

README.md

@@ -4,6 +4,8 @@
 # epidatasets
 
 <!-- badges: start -->
+
+[![R-CMD-check](https://github.com/cmu-delphi/epidatasets/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/cmu-delphi/epidatasets/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 This package contains data sets used to compile vignettes and other

_pkgdown.yml

@@ -1,19 +1,16 @@
-url: https://cmu-delphi.github.io/epipredict/
+url: https://cmu-delphi.github.io/epidatasets/
 template:
   bootstrap: 5
   bootswatch: cosmo
   bslib:
     font_scale: 1.0
-    primary: "#C41230"    # dark blue active text
-    link-color: "#C41230" # brighter link color, contrast 4.52
-    # navbar
-    navbar-bg: "#C41230"  # match to site bg
-    navbar-fg: "#f8f8f8"
-
+    primary: '#C41230'
+    link-color: '#C41230'
+    navbar-bg: '#C41230'
+    navbar-fg: '#f8f8f8'
 navbar:
-  bg: "#C41230"
-  fg: "#f8f8f8"
-
+  bg: '#C41230'
+  fg: '#f8f8f8'
 home:
   links:
   - text: The epiprocess R package
@@ -22,3 +19,4 @@ home:
     href: https://cmu-delphi.github.io/covidcast/covidcastR/
   - text: The epidatr R package
     href: https://github.com/cmu-delphi/epidatr/
+