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11 | 11 | 7 methods listed.
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12 | 12 | # CLIJ2 methods not part of CLIJ1
|
13 | 13 | * [CLIJ2_GPUProperties()](https://clij.github.io/clij2-docs/reference_GPUProperties)
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| 14 | +* [CLIJ2_absoluteDifference(Image source1, Image source2, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_absoluteDifference) |
14 | 15 | * [CLIJ2_adjacencyMatrixToTouchMatrix(Image adjacency_matrix, ByRef Image touch_matrix)](https://clij.github.io/clij2-docs/reference_adjacencyMatrixToTouchMatrix)
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15 | 16 | * [CLIJ2_averageDistanceOfNClosestPoints(Image distance_matrix, ByRef Image distance_list_destination, Number nClosestPointsTofind)](https://clij.github.io/clij2-docs/reference_averageDistanceOfNClosestPoints)
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16 | 17 | * [CLIJ2_averageDistanceOfNFarOffPoints(Image distance_matrix, ByRef Image distance+_list_destination, Number nFarOffPointsTofind)](https://clij.github.io/clij2-docs/reference_averageDistanceOfNFarOffPoints)
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24 | 25 | * [CLIJ2_bottomHatBox(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)](https://clij.github.io/clij2-docs/reference_bottomHatBox)
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25 | 26 | * [CLIJ2_bottomHatSphere(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)](https://clij.github.io/clij2-docs/reference_bottomHatSphere)
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26 | 27 | * [CLIJ2_boundingBox(Image source)](https://clij.github.io/clij2-docs/reference_boundingBox)
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27 |
| -* [CLIJ2_centroidsOfLabels(Image source)](https://clij.github.io/clij2-docs/reference_centroidsOfLabels) |
| 28 | +* [CLIJ2_centroidsOfLabels(Image source, ByRef Image pointlist_destination)](https://clij.github.io/clij2-docs/reference_centroidsOfLabels) |
28 | 29 | * [CLIJ2_closeIndexGapsInLabelMap(Image labeling_input, ByRef Image labeling_destination)](https://clij.github.io/clij2-docs/reference_closeIndexGapsInLabelMap)
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29 | 30 | * [CLIJ2_closingBox(Image input, ByRef Image destination, Number number_of_dilations_and_erosions)](https://clij.github.io/clij2-docs/reference_closingBox)
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30 | 31 | * [CLIJ2_closingDiamond(Image input, ByRef Image destination, Number number_of_dilations_and_erotions)](https://clij.github.io/clij2-docs/reference_closingDiamond)
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|
34 | 35 | * [CLIJ2_connectedComponentsLabeling(Image binary_input, ByRef Image labeling_destination)](https://clij.github.io/clij2-docs/reference_connectedComponentsLabeling)
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35 | 36 | * [CLIJ2_connectedComponentsLabelingBox(Image binary_input, ByRef Image labeling_destination)](https://clij.github.io/clij2-docs/reference_connectedComponentsLabelingBox)
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36 | 37 | * [CLIJ2_connectedComponentsLabelingDiamond(Image binary_input, ByRef Image labeling_destination)](https://clij.github.io/clij2-docs/reference_connectedComponentsLabelingDiamond)
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| 38 | +* [CLIJ2_convolve(Image source, Image convolution_kernel, Image destination)](https://clij.github.io/clij2-docs/reference_convolve) |
37 | 39 | * [CLIJ2_countNonZeroPixels(Image source)](https://clij.github.io/clij2-docs/reference_countNonZeroPixels)
|
38 | 40 | * [CLIJ2_countTouchingNeighbors(Image touch_matrix, ByRef Image touching_neighbors_count_destination)](https://clij.github.io/clij2-docs/reference_countTouchingNeighbors)
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39 | 41 | * [CLIJ2_customOperation(String operation_code, String global_code, Array image_parameters)](https://clij.github.io/clij2-docs/reference_customOperation)
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68 | 70 | * [CLIJ2_gaussianBlur3D(Image source, ByRef Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)](https://clij.github.io/clij2-docs/reference_gaussianBlur3D)
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69 | 71 | * [CLIJ2_generateBinaryOverlapMatrix(Image label_map1, Image label_map2, ByRef Image touch_matrix_destination)](https://clij.github.io/clij2-docs/reference_generateBinaryOverlapMatrix)
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70 | 72 | * [CLIJ2_generateDistanceMatrix(Image coordinate_list1, Image coordinate_list2, ByRef Image distance_matrix_destination)](https://clij.github.io/clij2-docs/reference_generateDistanceMatrix)
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71 |
| -* [CLIJ2_generateParametricImage(Image parameter_value_vector, Image label_map, ByRef Image parametric_image_destination)](https://clij.github.io/clij2-docs/reference_generateParametricImage) |
| 73 | +* [CLIJ2_generateJaccardIndexMatrix(Image label_map1, Image label_map2, ByRef Image jaccard_index_matrix_destination)](https://clij.github.io/clij2-docs/reference_generateJaccardIndexMatrix) |
| 74 | +* [CLIJ2_generateParametricImage(Image label_map, Image parameter_value_vector, ByRef Image parametric_image_destination)](https://clij.github.io/clij2-docs/reference_generateParametricImage) |
72 | 75 | * [CLIJ2_generateParametricImageFromResultsTableColumn(Image label_map, ByRef Image parametric_image_destination, String column)](https://clij.github.io/clij2-docs/reference_generateParametricImageFromResultsTableColumn)
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| 76 | +* [CLIJ2_generateTouchCountMatrix(Image label_map, ByRef Image touch_count_matrix_destination)](https://clij.github.io/clij2-docs/reference_generateTouchCountMatrix) |
73 | 77 | * [CLIJ2_generateTouchMatrix(Image label_map, ByRef Image touch_matrix_destination)](https://clij.github.io/clij2-docs/reference_generateTouchMatrix)
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74 | 78 | * [CLIJ2_getAutomaticThreshold(Image input, String method, ByRef Number threshold_value)](https://clij.github.io/clij2-docs/reference_getAutomaticThreshold)
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75 | 79 | * [CLIJ2_getBinaryImageAspectRatio3D(Image binary_input, ByRef Number aspect_ratio)](https://clij.github.io/clij2-docs/reference_getBinaryImageAspectRatio3D)
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76 | 80 | * [CLIJ2_getBinaryImageEigenValues3D(Image binary_input, ByRef Number eigen_value_x, ByRef Number eigen_value_y, ByRef Number eigen_value_z)](https://clij.github.io/clij2-docs/reference_getBinaryImageEigenValues3D)
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77 | 81 | * [CLIJ2_getBoundingBox(Image source, ByRef Number boundingBoxX, ByRef Number boundingBoxY, ByRef Number boundingBoxZ, ByRef Number boundingBoxWidth, ByRef Number boundingBoxHeight, ByRef Number boundingBoxDepth)](https://clij.github.io/clij2-docs/reference_getBoundingBox)
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78 |
| -* [CLIJ2_getCenterOfMass(Image source, ByRef Number centerOfMassX, ByRef Number centerOfMassY, , ByRef Number centerOfMassZ)](https://clij.github.io/clij2-docs/reference_getCenterOfMass) |
| 82 | +* [CLIJ2_getCenterOfMass(Image source, ByRef Number centerOfMassX, ByRef Number centerOfMassY, ByRef Number centerOfMassZ)](https://clij.github.io/clij2-docs/reference_getCenterOfMass) |
79 | 83 | * [CLIJ2_getDimensions(Image source, ByRef Number width, ByRef Number height, ByRef Number depth)](https://clij.github.io/clij2-docs/reference_getDimensions)
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80 | 84 | * [CLIJ2_getGPUProperties(ByRef String GPU_name, ByRef Number global_memory_in_bytes, ByRef Number OpenCL_version)](https://clij.github.io/clij2-docs/reference_getGPUProperties)
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81 | 85 | * [CLIJ2_getJaccardIndex(Image source1, Image source2, ByRef Number jaccard_index)](https://clij.github.io/clij2-docs/reference_getJaccardIndex)
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|
116 | 120 | * [CLIJ2_meanOfPixelsAboveThreshold(Image source, Number threshold)](https://clij.github.io/clij2-docs/reference_meanOfPixelsAboveThreshold)
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117 | 121 | * [CLIJ2_meanOfTouchingNeighbors(Image values, Image touch_matrix, ByRef Image mean_values_destination)](https://clij.github.io/clij2-docs/reference_meanOfTouchingNeighbors)
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118 | 122 | * [CLIJ2_meanSquaredError(Image source1, Image source2)](https://clij.github.io/clij2-docs/reference_meanSquaredError)
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| 123 | +* [CLIJ2_meanXProjection(Image source, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_meanXProjection) |
| 124 | +* [CLIJ2_meanYProjection(Image source, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_meanYProjection) |
119 | 125 | * [CLIJ2_meanZProjectionBounded(Image source, ByRef Image destination_mean, Number min_z, Number max_z)](https://clij.github.io/clij2-docs/reference_meanZProjectionBounded)
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120 | 126 | * [CLIJ2_medianOfTouchingNeighbors(Image values, Image touch_matrix, ByRef Image mean_values_destination)](https://clij.github.io/clij2-docs/reference_medianOfTouchingNeighbors)
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121 | 127 | * [CLIJ2_medianZProjection(Image source, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_medianZProjection)
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122 | 128 | * [CLIJ2_minimumDistanceOfTouchingNeighbors(Image distance_matrix, Image touch_matrix, ByRef Image minimum_distancelist_destination)](https://clij.github.io/clij2-docs/reference_minimumDistanceOfTouchingNeighbors)
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123 | 129 | * [CLIJ2_minimumOctagon(Image input, ByRef Image destination, Number iterations)](https://clij.github.io/clij2-docs/reference_minimumOctagon)
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124 | 130 | * [CLIJ2_minimumOfMaskedPixels(Image source, Image mask)](https://clij.github.io/clij2-docs/reference_minimumOfMaskedPixels)
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125 | 131 | * [CLIJ2_minimumOfTouchingNeighbors(Image values, Image touch_matrix, ByRef Image minimum_values_destination)](https://clij.github.io/clij2-docs/reference_minimumOfTouchingNeighbors)
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| 132 | +* [CLIJ2_minimumXProjection(Image source, ByRef Image destination_sum)](https://clij.github.io/clij2-docs/reference_minimumXProjection) |
| 133 | +* [CLIJ2_minimumYProjection(Image source, ByRef Image destination_sum)](https://clij.github.io/clij2-docs/reference_minimumYProjection) |
126 | 134 | * [CLIJ2_minimumZProjectionBounded(Image source, ByRef Image destination_min, Number min_z, Number max_z)](https://clij.github.io/clij2-docs/reference_minimumZProjectionBounded)
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127 | 135 | * [CLIJ2_minimumZProjectionThresholdedBounded(Image source, ByRef Image destination_min, Number min_z, Number max_z)](https://clij.github.io/clij2-docs/reference_minimumZProjectionThresholdedBounded)
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128 | 136 | * [CLIJ2_multiplyImageAndCoordinate(Image source, ByRef Image destination, Number dimension)](https://clij.github.io/clij2-docs/reference_multiplyImageAndCoordinate)
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151 | 159 | * [CLIJ2_pullLabelsToROIList(Image labelmap_input)](https://clij.github.io/clij2-docs/reference_pullLabelsToROIList)
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152 | 160 | * [CLIJ2_pullLabelsToROIManager(Image labelmap_input)](https://clij.github.io/clij2-docs/reference_pullLabelsToROIManager)
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153 | 161 | * [CLIJ2_pullString(Image input, ByRef String output)](https://clij.github.io/clij2-docs/reference_pullString)
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| 162 | +* [CLIJ2_pullToCurrentSlice(Image input_slice, String target_image_stack)](https://clij.github.io/clij2-docs/reference_pullToCurrentSlice) |
| 163 | +* [CLIJ2_pullToCurrentSliceSelection(Image input_slice, String target_image_stack)](https://clij.github.io/clij2-docs/reference_pullToCurrentSliceSelection) |
154 | 164 | * [CLIJ2_pullToROIManager(Image binary_input)](https://clij.github.io/clij2-docs/reference_pullToROIManager)
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155 | 165 | * [CLIJ2_pullToResultsTable(Image source)](https://clij.github.io/clij2-docs/reference_pullToResultsTable)
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156 | 166 | * [CLIJ2_pushArray(ByRef Image destination, Array input, Number width, Number height, Number depth)](https://clij.github.io/clij2-docs/reference_pushArray)
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157 | 167 | * [CLIJ2_pushCurrentSelection(String image)](https://clij.github.io/clij2-docs/reference_pushCurrentSelection)
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| 168 | +* [CLIJ2_pushCurrentSliceSelection(String image)](https://clij.github.io/clij2-docs/reference_pushCurrentSliceSelection) |
158 | 169 | * [CLIJ2_pushResultsTable(ByRef Image destination)](https://clij.github.io/clij2-docs/reference_pushResultsTable)
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159 | 170 | * [CLIJ2_pushResultsTableColumn(ByRef Image destination, String column_name)](https://clij.github.io/clij2-docs/reference_pushResultsTableColumn)
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160 | 171 | * [CLIJ2_pushString(Image destination, Array input, Number width, Number height, Number depth)](https://clij.github.io/clij2-docs/reference_pushString)
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161 | 172 | * [CLIJ2_reduceStack(Image input, ByRef Image destination, Number reductionFactor, Number offset)](https://clij.github.io/clij2-docs/reference_reduceStack)
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162 | 173 | * [CLIJ2_replaceIntensities(Image input, Image new_values_vector, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_replaceIntensities)
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163 | 174 | * [CLIJ2_replaceIntensity(Image input, ByRef Image destination, Number oldValue, Number newValue)](https://clij.github.io/clij2-docs/reference_replaceIntensity)
|
| 175 | +* [CLIJ2_replacePixelsIfZero(Image input1, Image input2, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_replacePixelsIfZero) |
164 | 176 | * [CLIJ2_resample(Image source, ByRef Image destination, Number factorX, Number factorY, Number factorZ, Boolean linearInterpolation)](https://clij.github.io/clij2-docs/reference_resample)
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165 | 177 | * [CLIJ2_resliceRadial(Image source, ByRef Image destination, Number numberOfAngles, Number angleStepSize, Number startAngleDegrees, Number centerX, Number centerY, Number scaleFactorX, Number scaleFactorY)](https://clij.github.io/clij2-docs/reference_resliceRadial)
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166 | 178 | * [CLIJ2_resliceRadialTop(Image source, ByRef Image destination, Number numberOfAngles, Number angleStepSize, Number startAngleDegrees, Number centerX, Number centerY, Number scaleFactorX, Number scaleFactorY)](https://clij.github.io/clij2-docs/reference_resliceRadialTop)
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|
192 | 204 | * [CLIJ2_sobel(Image source, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_sobel)
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193 | 205 | * [CLIJ2_sorensenDiceCoefficient(Image source1, Image source2)](https://clij.github.io/clij2-docs/reference_sorensenDiceCoefficient)
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194 | 206 | * [CLIJ2_spotsToPointList(Image input_spots, ByRef Image destination_pointlist)](https://clij.github.io/clij2-docs/reference_spotsToPointList)
|
| 207 | +* [CLIJ2_squaredDifference(Image source1, Image source2, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_squaredDifference) |
195 | 208 | * [CLIJ2_standardDeviationOfAllPixels(Image source)](https://clij.github.io/clij2-docs/reference_standardDeviationOfAllPixels)
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196 | 209 | * [CLIJ2_standardDeviationOfMaskedPixels(Image source, Image mask)](https://clij.github.io/clij2-docs/reference_standardDeviationOfMaskedPixels)
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197 | 210 | * [CLIJ2_standardDeviationOfTouchingNeighbors(Image values, Image touch_matrix, ByRef Image standard_deviation_values_destination)](https://clij.github.io/clij2-docs/reference_standardDeviationOfTouchingNeighbors)
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229 | 242 | * [CLIJ2_transposeXY(Image input, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_transposeXY)
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230 | 243 | * [CLIJ2_transposeXZ(Image input, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_transposeXZ)
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231 | 244 | * [CLIJ2_transposeYZ(Image input, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_transposeYZ)
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| 245 | +* [CLIJ2_undefinedToZero(Image source, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_undefinedToZero) |
232 | 246 | * [CLIJ2_varianceOfAllPixels(Image source)](https://clij.github.io/clij2-docs/reference_varianceOfAllPixels)
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233 | 247 | * [CLIJ2_varianceOfMaskedPixels(Image source, Image mask)](https://clij.github.io/clij2-docs/reference_varianceOfMaskedPixels)
|
| 248 | +* [CLIJ2_voronoiLabeling(Image input, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_voronoiLabeling) |
234 | 249 | * [CLIJ2_voronoiOctagon(Image input, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_voronoiOctagon)
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235 | 250 | * [CLIJ2_watershed(Image binary_source, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_watershed)
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236 | 251 | * [CLIJ2_writeValuesToPositions(Image positionsAndValues, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_writeValuesToPositions)
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237 | 252 |
|
238 |
| -224 methods listed. |
| 253 | +239 methods listed. |
239 | 254 | # CLIJx methods not part of CLIJ2
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240 | 255 | * [CLIJx_absoluteInplace(Image source_destination)](https://clij.github.io/clij2-docs/reference_CLIJx_absoluteInplace)
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241 | 256 | * [CLIJx_applyAutoContextWekaModel(Image input, Image destination_prediction, String model_filename, String feature_definitions, Number numberOfAutoContextIterations)](https://clij.github.io/clij2-docs/reference_CLIJx_applyAutoContextWekaModel)
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242 | 257 | * [CLIJx_applyWekaModel(Image featureStack3D, Image prediction2D_destination, String loadModelFilename)](https://clij.github.io/clij2-docs/reference_CLIJx_applyWekaModel)
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243 | 258 | * [CLIJx_applyWekaToTable(String predictionColumnName, String loadModelFilename)](https://clij.github.io/clij2-docs/reference_CLIJx_applyWekaToTable)
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244 | 259 | * [CLIJx_automaticThresholdInplace(Image input_and_destination, String method)](https://clij.github.io/clij2-docs/reference_CLIJx_automaticThresholdInplace)
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245 | 260 | * [CLIJx_averageAngleBetweenAdjacentTriangles(Image pointlist, Image touch_matrix, ByRef Image average_distancelist_destination)](https://clij.github.io/clij2-docs/reference_CLIJx_averageAngleBetweenAdjacentTriangles)
|
| 261 | +* [CLIJx_bilateral(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ, Number sigma_intensity, Number sigma_space)](https://clij.github.io/clij2-docs/reference_CLIJx_bilateral) |
246 | 262 | * [CLIJx_blurBuffers3D(Image source, ByRef Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)](https://clij.github.io/clij2-docs/reference_CLIJx_blurBuffers3D)
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247 | 263 | * [CLIJx_blurImages3D(Image source, ByRef Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)](https://clij.github.io/clij2-docs/reference_CLIJx_blurImages3D)
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248 | 264 | * [CLIJx_blurInplace3D(Image source_and_destination, Number sigmaX, Number sigmaY, Number sigmaZ)](https://clij.github.io/clij2-docs/reference_CLIJx_blurInplace3D)
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|
264 | 280 | * [CLIJx_listWebcams()](https://clij.github.io/clij2-docs/reference_CLIJx_listWebcams)
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265 | 281 | * [CLIJx_localExtremaBox(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)](https://clij.github.io/clij2-docs/reference_CLIJx_localExtremaBox)
|
266 | 282 | * [CLIJx_localID(Image input, ByRef Image destination)](https://clij.github.io/clij2-docs/reference_CLIJx_localID)
|
| 283 | +* [CLIJx_nonLocalMeans(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ, Number sigma)](https://clij.github.io/clij2-docs/reference_CLIJx_nonLocalMeans) |
267 | 284 | * [CLIJx_organiseWindows(Number startX, Number startY, Number tilesX, Number tilesY, Number tileWidth, Number tileHeight)](https://clij.github.io/clij2-docs/reference_CLIJx_organiseWindows)
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268 | 285 | * [CLIJx_particleImageVelocimetry(Image source1, Image source2, Image destinationDeltaX, Image destinationDeltaY, Image destinationDeltaZ, Number maxDeltaX, Number maxDeltaY, Number maxDeltaZ, Boolean correctLocalShift)](https://clij.github.io/clij2-docs/reference_CLIJx_particleImageVelocimetry)
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269 | 286 | * [CLIJx_particleImageVelocimetryTimelapse(Image source, Image destinationDeltaX, Image destinationDeltaY, Image destinationDeltaZ, Number maxDeltaX, Number maxDeltaY, Number maxDeltaZ, Boolean correctLocalShift)](https://clij.github.io/clij2-docs/reference_CLIJx_particleImageVelocimetryTimelapse)
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323 | 340 | * [CLIJx_writeVTKLineListToDisc(Image pointlist, Image touch_matrix, String filename)](https://clij.github.io/clij2-docs/reference_CLIJx_writeVTKLineListToDisc)
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324 | 341 | * [CLIJx_writeXYZPointListToDisc(Image pointlist, String filename)](https://clij.github.io/clij2-docs/reference_CLIJx_writeXYZPointListToDisc)
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325 | 342 |
|
326 |
| -85 methods listed. |
| 343 | +87 methods listed. |
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