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clij25_transition_notes.md

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# CLIJ2 - CLIJ2.5 transition guide
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CLIJ2.5 is fully backwards compatible to CLIJ2 and [CLIJx](https://github.com/clij/clijx). No code changes are necessary.
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CLIJ2.5 is fully backwards compatible to CLIJ2 and [CLIJx](https://github.com/clij/clijx).
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No code changes are necessary for ImageJ macros.
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However, it is recommended to update scripts which were using CLIJx-functions to use CLIJ2 instead if possible
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as functions from CLIJx were moved to CLIJ2.
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as functions from CLIJx were moved to CLIJ2. Furhtermore, CLIJx Image Data Flow Graphs need to be updated (see below)
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For example, you can replace this line using CLIJ2:
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```
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Ext.CLIJ2_dilateLabels(input, output, radius);
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```
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## Image Data Flow Graph updates (CLIJx assistant)
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## CLIJx Image Data Flow Graph updates (CLIJx assistant)
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If you generated Image Data Flow Graphs as groovy scripts using the CLIJx-assistant, it might be necessary to update
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those by replacing the '.clijx.' package to '.clij2.' in lines where plugins where used which were moved from clijx to
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clij2. For example this line
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^ ^
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```
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## API Changes
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## API Updates
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The following functions were renamed when transitioning from CLIJx to CLIJ2.
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Again, no changes to CLIJx-based scripts are necessary. The old CLIJx functions still exist and are marked as deprecated.

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