Doctests out of sync - failing CI tests

[ejmolinelli]

Motivation

Doctests are failing for ontology_parser.py. Docstrings should be updated to reflect true outcomes. The source of the issue is that doctests were written against older ontology (cog) versions. Changes to the underlying ontologies (or the API) likely change the expected output.

Definition of Done

• all doctests in ontology_parser.py pass.

Tasks

Detail the specific tasks that can be used to accomplish the desired changes.
If detailed steps cannot be provided at this time, please file a Tech Proposal instead.

• manually update the doctests and ensure the results match the current state of the ontologies
• BONUS: make the doctests procedural so that they always conform to the latest ontologies.