Update SARS-CoV-2_get_ngs.sh

cfarkas · web-flow · commit 60e5c146a181 · 2020-07-15T15:59:31.000-06:00
diff --git a/SARS-CoV-2_get_ngs.sh b/SARS-CoV-2_get_ngs.sh
@@ -104,7 +104,7 @@ echo ""
 
 b= ls -1 *.fastq.gz.fastp
 for b in *.fastq.gz.fastp; do minimap2 -ax sr ${2} ${b} > ${b}.sam -t ${3}
-rm ${2}
+rm ${b}
 done
 
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