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software_versions.md

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bedToBigBed downloaded 2023-05-11.

R sessionInfo()

R version 4.2.0 (2022-04-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux 8.8 (Ootpa)

Matrix products: default
BLAS/LAPACK: /vast/palmer/apps/avx2/software/OpenBLAS/0.3.12-GCC-10.2.0/lib/libopenblas_haswellp-r0.3.12.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats4    stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
 [1] qs_0.26.1                   Rcpp_1.0.12
 [3] furrr_0.2.3                 future_1.25.0
 [5] GenomicAlignments_1.34.1    Rsamtools_2.14.0
 [7] SummarizedExperiment_1.28.0 Biobase_2.58.0
 [9] MatrixGenerics_1.10.0       wbData_0.9.1
[11] matrixStats_1.2.0           rtracklayer_1.58.0
[13] GenomicRanges_1.50.2        Biostrings_2.66.0
[15] GenomeInfoDb_1.34.9         XVector_0.38.0
[17] IRanges_2.32.0              S4Vectors_0.36.2
[19] BiocGenerics_0.44.0         optparse_1.7.4
[21] lubridate_1.8.0             forcats_0.5.1
[23] stringr_1.4.0               dplyr_1.1.4
[25] purrr_1.0.2                 readr_2.1.5
[27] tidyr_1.2.0                 tibble_3.2.1
[29] ggplot2_3.3.5               tidyverse_2.0.0

loaded via a namespace (and not attached):
 [1] lattice_0.20-45        listenv_0.8.0          digest_0.6.35
 [4] utf8_1.2.4             parallelly_1.31.1      R6_2.5.1
 [7] pillar_1.9.0           zlibbioc_1.44.0        rlang_1.1.3
[10] Matrix_1.4-1           BiocParallel_1.32.6    RCurl_1.98-1.6
[13] munsell_0.5.0          DelayedArray_0.24.0    compiler_4.2.0
[16] pkgconfig_2.0.3        globals_0.14.0         tidyselect_1.2.1
[19] GenomeInfoDbData_1.2.9 codetools_0.2-18       XML_3.99-0.9
[22] fansi_1.0.6            crayon_1.5.1           tzdb_0.4.0
[25] withr_3.0.0            bitops_1.0-7           grid_4.2.0
[28] gtable_0.3.0           lifecycle_1.0.4        magrittr_2.0.3
[31] scales_1.2.0           RcppParallel_5.1.5     cli_3.6.2
[34] stringi_1.7.6          getopt_1.20.3          ellipsis_0.3.2
[37] generics_0.1.2         vctrs_0.6.5            stringfish_0.16.0
[40] RApiSerialize_0.1.2    rjson_0.2.21           restfulr_0.0.15
[43] tools_4.2.0            glue_1.7.0             hms_1.1.1
[46] parallel_4.2.0         yaml_2.3.5             colorspace_2.0-3
[49] BiocIO_1.8.0