HaploClique depends on boost and cmake. You can install them with a package manager of your choice.
apt-get install libncurses5-dev cmake libboost-all-dev git build-essential zlib1g-dev
Please XCode and its command line tools, and with brew:
brew install cmake boost ninja
HaploClique has not been tested on Windows.
If you want to install HaploClique to a non-standard directory, change it with cmake -DCMAKE_INSTALL_PREFIX=<prefix-path> ..
git clone https://github.com/cbg-ethz/haploclique && cd haploclique
git submodule update --init --remote
mkdir build && cd build
cmake .. && makeWant blazing fast builds? Install ninja on your machine and execute
cmake -GNinja .. && ninja
Run tests?
ninja check