You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I have trying to run sourcetracker 2 with the following command:
source activate st2
sourcetracker2 -i Lean_d14d70.otu.txt -m Lean_d14d70.meta.txt -o Leandonor_14_70 --per_sink_feature_assignments --jobs=16
I am getting the following error message every time:
Traceback (most recent call last):
File "/panfs/roc/groups/8/cmstaley/mhkhan/.local/bin/sourcetracker2", line 5, in
from sourcetracker._cli.gibbs import gibbs
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/sourcetracker/init.py", line 11, in
from ._sourcetracker import gibbs
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/sourcetracker/_sourcetracker.py", line 17, in
from skbio.stats import subsample_counts
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/init.py", line 11, in
import skbio.io # noqa
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/io/init.py", line 243, in
import_module('skbio.io.format.clustal')
File "/panfs/roc/msisoft/anaconda/python3-2020.07-mamba/lib/python3.8/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/io/format/clustal.py", line 148, in
from skbio.alignment import TabularMSA
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/alignment/init.py", line 204, in
from ._pairwise import (
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/alignment/_pairwise.py", line 15, in
from skbio.alignment._ssw_wrapper import StripedSmithWaterman
File "skbio/alignment/_ssw_wrapper.pyx", line 1, in init skbio.alignment._ssw_wrapper
ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80 from PyObject
--------------------x---------------------------------------x--------------------------------------------x---------------------------------x
Now, I have uninstalling the conda and re-installing it by both ways i.e., with and without developmental version but it gave me the same error. I have checked my files and they seems fine. I don't what the issue is. Kindly help.
The text was updated successfully, but these errors were encountered:
I have trying to run sourcetracker 2 with the following command:
source activate st2
sourcetracker2 -i Lean_d14d70.otu.txt -m Lean_d14d70.meta.txt -o Leandonor_14_70 --per_sink_feature_assignments --jobs=16
I am getting the following error message every time:
Traceback (most recent call last):
File "/panfs/roc/groups/8/cmstaley/mhkhan/.local/bin/sourcetracker2", line 5, in
from sourcetracker._cli.gibbs import gibbs
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/sourcetracker/init.py", line 11, in
from ._sourcetracker import gibbs
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/sourcetracker/_sourcetracker.py", line 17, in
from skbio.stats import subsample_counts
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/init.py", line 11, in
import skbio.io # noqa
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/io/init.py", line 243, in
import_module('skbio.io.format.clustal')
File "/panfs/roc/msisoft/anaconda/python3-2020.07-mamba/lib/python3.8/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/io/format/clustal.py", line 148, in
from skbio.alignment import TabularMSA
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/alignment/init.py", line 204, in
from ._pairwise import (
File "/home/cmstaley/mhkhan/.local/lib/python3.8/site-packages/skbio/alignment/_pairwise.py", line 15, in
from skbio.alignment._ssw_wrapper import StripedSmithWaterman
File "skbio/alignment/_ssw_wrapper.pyx", line 1, in init skbio.alignment._ssw_wrapper
ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80 from PyObject
--------------------x---------------------------------------x--------------------------------------------x---------------------------------x
Now, I have uninstalling the conda and re-installing it by both ways i.e., with and without developmental version but it gave me the same error. I have checked my files and they seems fine. I don't what the issue is. Kindly help.
The text was updated successfully, but these errors were encountered: