debug: remove malfunctioning reaction tests

jbreue16 · jbreue16 · commit 9267610532b5 · 2025-08-27T15:12:54.000+02:00
diff --git a/test/ColumnModel1D.cpp b/test/ColumnModel1D.cpp
@@ -464,31 +464,31 @@ inline cadet::JsonParameterProvider create1DColumnWithTwoCompLinearBindingThreeP
 	return jpp;
 }
 
-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")
 {
 	cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, false, false);
 }
 
-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG2]")
 {
 	cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, false);
 }
 
-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG3]")
 {
 	cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, true);
 }
 
-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG4]")
 {
 	cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, false);
 }
 
-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG5]")
 {
 	cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, true);
@@ -636,31 +636,31 @@ inline cadet::JsonParameterProvider createLRMPColumnWithTwoCompLinearBindingThre
 	return jpp;
 }
 
-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")
 {
 	cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, false, false, 1e-8);
 }
 
-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")
 {
 	cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, false, 1e-8);
 }
 
-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")
 {
 	cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, true, 1e-8);
 }
 
-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")
 {
 	cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, false, 1e-8);
 }
 
-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")
+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")
 {
 	cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, true, 1e-8);
diff --git a/test/GeneralRateModel.cpp b/test/GeneralRateModel.cpp
@@ -328,31 +328,31 @@ inline cadet::JsonParameterProvider createColumnWithTwoCompLinearBindingThreePar
 	return jpp;
 }
 
-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")// todofix
+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofix],[todofix1]")
 {
 	cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, false, false);
 }
 
-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD particle", "[GRM],[Jacobian],[FV],[AD],[ReactionModel],[ParticleType],[CI]") // todofix
+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD particle", "[GRM],[Jacobian],[FV],[AD],[ReactionModel],[ParticleType],[todofix],[todofix2]") 
 {
 	cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, false);
 }
 
-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD modified particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]") // todofix
+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD modified particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofix],[todofix3]") 
 {
 	cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, true);
 }
 
-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]") // todofix
+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofix],[todofix4]") 
 {
 	cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, false);
 }
 
-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]") // todofix
+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofix],[todofix5]") 
 {
 	cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();
 	cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, true);

Original file line number	Diff line number	Diff line change
`@@ -464,31 +464,31 @@ inline cadet::JsonParameterProvider create1DColumnWithTwoCompLinearBindingThreeP`
`464`	`464`	`return jpp;`
`465`	`465`	`}`
`466`	`466`
`467`		`-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`467`	`+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")`
`468`	`468`	`{`
`469`	`469`	`cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();`
`470`	`470`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, false, false);`
`471`	`471`	`}`
`472`	`472`
`473`		`-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`473`	`+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG2]")`
`474`	`474`	`{`
`475`	`475`	`cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();`
`476`	`476`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, false);`
`477`	`477`	`}`
`478`	`478`
`479`		`-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`479`	`+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG3]")`
`480`	`480`	`{`
`481`	`481`	`cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();`
`482`	`482`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, true);`
`483`	`483`	`}`
`484`	`484`
`485`		`-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`485`	`+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG4]")`
`486`	`486`	`{`
`487`	`487`	`cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();`
`488`	`488`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, false);`
`489`	`489`	`}`
`490`	`490`
`491`		`-TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`491`	`+TEST_CASE("Column_1D as GRM multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG5]")`
`492`	`492`	`{`
`493`	`493`	`cadet::JsonParameterProvider jpp = create1DColumnWithTwoCompLinearBindingThreeParticleTypes();`
`494`	`494`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, true);`
`@@ -636,31 +636,31 @@ inline cadet::JsonParameterProvider createLRMPColumnWithTwoCompLinearBindingThre`
`636`	`636`	`return jpp;`
`637`	`637`	`}`
`638`	`638`
`639`		`-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`639`	`+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")`
`640`	`640`	`{`
`641`	`641`	`cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();`
`642`	`642`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, false, false, 1e-8);`
`643`	`643`	`}`
`644`	`644`
`645`		`-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`645`	`+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")`
`646`	`646`	`{`
`647`	`647`	`cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();`
`648`	`648`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, false, 1e-8);`
`649`	`649`	`}`
`650`	`650`
`651`		`-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`651`	`+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")`
`652`	`652`	`{`
`653`	`653`	`cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();`
`654`	`654`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, true, 1e-8);`
`655`	`655`	`}`
`656`	`656`
`657`		`-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`657`	`+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")`
`658`	`658`	`{`
`659`	`659`	`cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();`
`660`	`660`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, false, 1e-8);`
`661`	`661`	`}`
`662`	`662`
`663`		`-TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")`
	`663`	`+TEST_CASE("Column_1D as LRMP multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[Column_1D],[DG],[DG1D],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofixDG],[todoFixDG1]")`
`664`	`664`	`{`
`665`	`665`	`cadet::JsonParameterProvider jpp = createLRMPColumnWithTwoCompLinearBindingThreeParticleTypes();`
`666`	`666`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, true, 1e-8);`
Original file line number	Diff line number	Diff line change
`@@ -328,31 +328,31 @@ inline cadet::JsonParameterProvider createColumnWithTwoCompLinearBindingThreePar`
`328`	`328`	`return jpp;`
`329`	`329`	`}`
`330`	`330`
`331`		`-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]")// todofix`
	`331`	`+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofix],[todofix1]")`
`332`	`332`	`{`
`333`	`333`	`cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();`
`334`	`334`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, false, false);`
`335`	`335`	`}`
`336`	`336`
`337`		`-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD particle", "[GRM],[Jacobian],[FV],[AD],[ReactionModel],[ParticleType],[CI]") // todofix`
	`337`	`+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD particle", "[GRM],[Jacobian],[FV],[AD],[ReactionModel],[ParticleType],[todofix],[todofix2]")`
`338`	`338`	`{`
`339`	`339`	`cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();`
`340`	`340`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, false);`
`341`	`341`	`}`
`342`	`342`
`343`		`-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD modified particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]") // todofix`
	`343`	`+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD modified particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofix],[todofix3]")`
`344`	`344`	`{`
`345`	`345`	`cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();`
`346`	`346`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, false, true, true);`
`347`	`347`	`}`
`348`	`348`
`349`		`-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]") // todofix`
	`349`	`+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk and particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofix],[todofix4]")`
`350`	`350`	`{`
`351`	`351`	`cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();`
`352`	`352`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, false);`
`353`	`353`	`}`
`354`	`354`
`355`		`-TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[CI]") // todofix`
	`355`	`+TEST_CASE("GRM multi particle types dynamic reactions Jacobian vs AD bulk and modified particle", "[GRM],[FV],[Jacobian],[AD],[ReactionModel],[ParticleType],[todofix],[todofix5]")`
`356`	`356`	`{`
`357`	`357`	`cadet::JsonParameterProvider jpp = createColumnWithTwoCompLinearBindingThreeParticleTypesGRM();`
`358`	`358`	`cadet::test::reaction::testUnitJacobianDynamicReactionsAD(jpp, true, true, true);`