Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

multicloud: update the cytomining workflow to have multiple tasks #80

Open
deflaux opened this issue Feb 23, 2023 · 0 comments
Open

multicloud: update the cytomining workflow to have multiple tasks #80

deflaux opened this issue Feb 23, 2023 · 0 comments

Comments

@deflaux
Copy link
Contributor

deflaux commented Feb 23, 2023

As part of one possible approach to enable #41, update cytomining.wdl to have multiple tasks.

Specifically, call task is_bucket_writable (renamed from gcloud_is_bucket_writable) at the beginning of the cytomining workflow and call task extract_and_copy (renamed from extract_and_gsutil_rsync) at the end so that it can take advantage of multi-cloud support.

(Note that cytomining_jumpcp.wdl is a bit more complicated, as it has support to perform federated auth to AWS when running in GCP so that inputs can be read from S3 and outputs can be written to S3.)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant