From 30a659c2047de1d123630ab003a236ced7ec9bde Mon Sep 17 00:00:00 2001
From: Brent Pedersen <bpederse@gmail.com>
Date: Wed, 4 Oct 2023 08:47:44 +0200
Subject: [PATCH] update order with effects from VEP

closes #157
---
 CHANGES.md                      | 1 +
 src/slivarpkg/default-order.txt | 3 +++
 2 files changed, 4 insertions(+)

diff --git a/CHANGES.md b/CHANGES.md
index 069f4d2..d5f9754 100644
--- a/CHANGES.md
+++ b/CHANGES.md
@@ -2,6 +2,7 @@ v0.3.1
 ======
 + add CSQ parsing js code: https://github.com/brentp/slivar/wiki/CSQ
 + expose sample.GT
++ update impact order to include new effects from VEP (#157)
 
 v0.3.0
 ======
diff --git a/src/slivarpkg/default-order.txt b/src/slivarpkg/default-order.txt
index 148e6cd..a54296f 100644
--- a/src/slivarpkg/default-order.txt
+++ b/src/slivarpkg/default-order.txt
@@ -38,6 +38,9 @@ mature_miRNA
 5_prime_UTR
 3_prime_UTR
 initiator_codon
+splice_donor_5th_base
+splice_polypyrimidine_tract
+splice_donor_region
 miRNA
 non_coding_transcript_exon
 non_coding_exon