NARPS Open Pipelines - A codebase to study variability of fMRI analysis workflows #67
Description
Title
NARPS Open Pipelines
Leaders
Boris Clénet - R&D Engineer, Empenn Team, INRIA Rennes, France
Mattermost : @bclenet
Collaborators
This project is developed in the Empenn team by Boris Clénet, Elodie Germani, Jérémy Lefort-Besnard and Camille Maumet with contributions by Rémi Gau.
All project contributors are listed in the Credits section of the project !
Brainhack Global 2023 Event
Brainhack Marseille
Project Description
The goal of the NARPS Open Pipelines project is to create a codebase reproducing the 70 pipelines of the NARPS study (Botvinik-Nezer et al., 2020) and share this as an open resource for the community.
We hope this tools will help analysing and understanding variability of fMRI analysis workflows, hence participating in the reproducible research movement.
Find relevant information about how to get started is in the README.md file.
Join us and contribute to an open-source tool for the community !
Link to project repository/sources
https://github.com/Inria-Empenn/narps_open_pipelines
Goals for Brainhack Global
- start new pipeline reproductions
- contribute to already stared pipelines
- proof read the documentation
- contribute to the documentation
- write tests for existing pipelines
Good first issues
- Contribute to the documentation (give feedback, help organizing)
- Write the pseudo-code for a pipeline
- Debug already implemented pipelines
Communication channels
Skills
- fMRI statistical analysis: advanced
- python (+ nipype): advanced
- writing and organizing documentation: basic
Onboarding documentation
General information can be found here: README file
How to contribute: CONTRIBUTING file
What will participants learn?
- using the nipype python library
- lots of fMRI analysis workflow examples
- good practices for (python) coding
Data to use
Although it may not be useful during the brainhack, the project's documentation (see corresponding section) gives information about required data.
Number of collaborators
4
Credit to collaborators
All project contributors are listed in the Credits section of the project.
Image
Type
documentation, pipeline_development
Development status
1_basic structure
Topic
reproducible_scientific_methods, statistical_modelling
Tools
AFNI, ANTs, BIDS, Datalad, fMRIPrep, FSL, Nipype, SPM
Programming language
documentation, Python
Modalities
fMRI
Git skills
0_no_git_skills, 1_commit_push, 2_branches_PRs
Anything else?
No response
Things to do after the project is submitted and ready to review.
- Add a comment below the main post of your issue saying:
Hi @brainhackorg/project-monitors my project is ready! - Twitter-sized summary of your project pitch.