pipeline.yml

name: Deployment Pipeline

on:
  workflow_dispatch:


jobs:
  integration:
    runs-on: ubuntu-latest
    steps:
    - name: Checkout code
      uses: actions/checkout@v2

    - name: Set up Python
      uses: actions/setup-python@v2
      with:
        python-version: '3.10'

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install .

    - name: Test BioCompose
      run: |
        pytest tests/main.py

  deployment:
    runs-on: ubuntu-latest
    needs: integration
    steps:
    - name: Checkout code
      uses: actions/checkout@v3

    - name: Set up Python
      uses: actions/setup-python@v2
      with:
        python-version: '3.10'

    - name: Install Poetry
      run: |
        curl -sSL https://install.python-poetry.org | python3 -
        echo "export PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV
        source $GITHUB_ENV

    - name: Install dependencies
      run: |
        poetry install

    - name: Extract project version
      run: |
        VERSION=$(poetry run python -c "import toml; print(toml.load('pyproject.toml')['tool']['poetry']['version'])")
        echo "VERSION=$VERSION" >> $GITHUB_ENV

    # - name: Build Documentation
    #   run: |
    #     make -C documentation clean
    #     make -C documentation html

    # - name: Create new github tags
    #   run: |
    #     git tag -m "Version v${{ env.VERSION }}" "v${{ env.VERSION }}"
    #     git push --tags

    - name: Publish new version on PyPI
      run: |
        poetry build
        sudo rm -rf bio_compose/__pycache__
        sudo rm -rf tests/__pycache__
        poetry publish --username __token__ --password ${{ secrets.ADMIN_PYPI_TOKEN }}

    - name: Notify Deployment
      run: echo "Version ${{ env.VERSION }} as been published on PyPI with release ${{ github.ref }}"