dont resolve all uris

Author: FynnBe

bioimageio/core/build_spec/build_model.py

@@ -891,7 +891,6 @@ def build_model(
         kwargs["maintainers"] = [model_spec.raw_nodes.Maintainer(**m) for m in maintainers]
 
     if parent is not None:
-        assert len(parent) == 2
         kwargs["parent"] = parent
 
     if training_data is not None:

bioimageio/core/resource_io/utils.py

@@ -67,12 +67,6 @@ def transform_LocalImportableModule(self, node: raw_nodes.LocalImportableModule)
 
         return nodes.ImportedSource(factory=getattr(module, node.callable_name))
 
-    @staticmethod
-    def transform_ImportableModule(node):
-        raise RuntimeError(
-            "Encountered raw_nodes.ImportableModule in _SourceNodeTransformer. Apply _UriNodeTransformer first!"
-        )
-
     @staticmethod
     def transform_ResolvedImportableSourceFile(node: raw_nodes.ResolvedImportableSourceFile) -> nodes.ImportedSource:
         module_path = resolve_source(node.source_file)
@@ -83,12 +77,6 @@ def transform_ResolvedImportableSourceFile(node: raw_nodes.ResolvedImportableSou
         importlib_spec.loader.exec_module(dep)  # type: ignore  # todo: possible to use "loader.load_module"?
         return nodes.ImportedSource(factory=getattr(dep, node.callable_name))
 
-    @staticmethod
-    def transform_ImportablePath(node):
-        raise RuntimeError(
-            "Encountered raw_nodes.ImportableSourceFile in _SourceNodeTransformer. Apply _UriNodeTransformer first!"
-        )
-
 
 class RawNodeTypeTransformer(NodeTransformer):
     def __init__(self, nodes_module: ModuleType):
@@ -117,9 +105,11 @@ def all_sources_available(
         return True
 
 
-def resolve_raw_resource_description(raw_rd: GenericRawRD, nodes_module: typing.Any) -> GenericResolvedNode:
-    """resolve all uris and sources"""
-    rd = UriNodeTransformer(root_path=raw_rd.root_path).transform(raw_rd)
+def resolve_raw_resource_description(
+    raw_rd: GenericRawRD, nodes_module: typing.Any, uri_only_if_in_package: bool = True
+) -> GenericResolvedNode:
+    """resolve all uris and paths (that are included when packaging)"""
+    rd = UriNodeTransformer(root_path=raw_rd.root_path, uri_only_if_in_package=uri_only_if_in_package).transform(raw_rd)
     rd = SourceNodeTransformer().transform(rd)
     rd = RawNodeTypeTransformer(nodes_module).transform(rd)
     return rd