Fix edit button (#228)

* Fix edit button

* Fix source

Author: oeway

Diff for: package-lock.json

@@ -1,6 +1,6 @@
 {
   "name": "bioimage",
-  "version": "0.4.2",
+  "version": "0.4.3",
   "private": true,
   "scripts": {
     "serve": "vue-cli-service serve",
@@ -23,7 +23,7 @@
     "js-yaml": "^4.1.0",
     "json-stringify-safe": "^5.0.1",
     "jszip": "^3.7.0",
-    "marked": "^2.0.0",
+    "marked": "^2.1.3",
     "mathjs": "^7.5.1",
     "ol": "^6.3.1",
     "register-service-worker": "^1.7.1",

Diff for: package.json

@@ -527,7 +527,10 @@ export default {
       });
       try {
         if (!this.client.credential) await this.login();
-        this.URI4Load = `${this.zenodoBaseURL}/record/${this.updateDepositId}`;
+        // example: updateDepositId=10.5281/zenodo.5850574
+        this.URI4Load = `${this.zenodoBaseURL}/record/${
+          this.updateDepositId.split("zenodo.")[1]
+        }`;
         await this.loadRdfFromURL(this.URI4Load);
       } catch (e) {
         alert("Failed to load resource: " + this.updateDepositId);

Diff for: src/components/Upload.vue

@@ -122,16 +122,20 @@ export const store = new Vuex.Store({
         typeof author === "string" ? { name: author } : author
       );
       item.config = item.config || {};
-      if (item.config._deposit) {
+      if (item.owners) {
         const userId = state.zenodoClient && state.zenodoClient.getUserId();
 
-        if (userId && item.config._deposit.owners.includes(userId)) {
+        if (userId && item.owners.includes(userId)) {
           if (!item.tags.includes("editable")) item.tags.push("editable");
         }
       }
       item.config._rdf_file =
         item.config._rdf_file || item.rdf_source || item.source; // TODO: some resources current doesn't have a dedicated rdf_file
-      if (item.type === "application" && item?.source?.endsWith(".imjoy.html"))
+      if (
+        item.type === "application" &&
+        typeof item.source === "string" &&
+        item.source.endsWith(".imjoy.html")
+      )
         state.allApps[item.id] = item;
       item.tags = item.tags.map(tag => tag.toLowerCase());
       item.tags.map(tag => {

Diff for: src/store.js

@@ -329,6 +329,7 @@
 </template>
 
 <script>
+import yaml from "js-yaml";
 import { mapState } from "vuex";
 import spdxLicenseList from "spdx-license-list/full";
 import ResourceItemSelector from "@/components/ResourceItemSelector.vue";
@@ -346,7 +347,7 @@ const DEFAULT_ICONS = {
   model: "hubspot"
 };
 import { setupDevMenu, runAppForItem, runAppForAllItems } from "../bioEngine";
-import { concatAndResolveUrl, debounce, getFullRdfFromDeposit } from "../utils";
+import { concatAndResolveUrl, debounce } from "../utils";
 
 function titleCase(str) {
   return str.replace(/_/g, " ").replace(/(^|\s)\S/g, function(t) {
@@ -363,12 +364,18 @@ const isTouchDevice = (function() {
 })();
 
 async function updateFullRDF(item) {
-  if (item.config._deposit) {
-    const newRDF = await getFullRdfFromDeposit(item.config._deposit, true);
-    for (let k of Object.keys(newRDF)) {
-      if (k !== "config") {
-        item[k] = newRDF[k];
+  if (item.rdf_source) {
+    const response = await fetch(item.rdf_source);
+    if (response.ok) {
+      const yamlStr = await response.text();
+      const newRDF = yaml.load(yamlStr);
+      for (let k of Object.keys(newRDF)) {
+        if (k !== "config") {
+          item[k] = newRDF[k];
+        }
       }
+    } else {
+      throw new Error(`Oops, failed to fetch RDF file.`);
     }
   }
 }
@@ -424,16 +431,16 @@ function normalizeItem(self, item) {
   );
   item.apps = [];
 
-  if (item.config._deposit) {
-    if (item.config._deposit.owners.includes(self.userId)) {
+  if (item.owners) {
+    if (item.owners.includes(self.userId)) {
       item.apps.unshift({
         name: "Edit",
         icon: "pencil",
         show_on_hover: true,
         run() {
           self.$router.push({
             name: "Update",
-            params: { updateDepositId: item.config._deposit.id }
+            params: { updateDepositId: item.id }
           });
         }
       });
@@ -490,11 +497,18 @@ function normalizeItem(self, item) {
           runAppForAllItems(self, self.allApps[item.id], self.resourceItems);
         }
       });
-    } else if (item.tags.includes("colab") && item.source.endsWith(".ipynb")) {
+    } else if (
+      item.tags.includes("colab") &&
+      item.source &&
+      item.source.endsWith(".ipynb")
+    ) {
       // convert github raw url to colab url
       item.config = item.config || {};
 
-      if (item.source.startsWith("https://raw.githubusercontent.com/")) {
+      if (
+        item.source &&
+        item.source.startsWith("https://raw.githubusercontent.com/")
+      ) {
         const b = item.source.split("/");
         item.config._colab_url = `https://colab.research.google.com/github/${
           b[3]