You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
It may be easiest to just do the two-pass mode as a matter of course: 2x runtime shouldn't be too bad when x is small, and it looks like it's necessary when x is big. We could try to come up with some kind of threshold (as measured e.g. by file size) that separates the cases best suited for single pass versus the cases where we need two passes to reduce memory, but I'm skeptical about the cost/benefit of that approach vs the simpler approach.
We had a case where we were trying to downsample 11 billion reads with 1 TB of RAM and seqtk said it needed more RAM.
Below, a suggestion was made to resolve the issue; however, it will run slower.
The text was updated successfully, but these errors were encountered: