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Handling fasta user input files #51

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danejo3 opened this issue Aug 21, 2023 · 0 comments
Open

Handling fasta user input files #51

danejo3 opened this issue Aug 21, 2023 · 0 comments

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@danejo3
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danejo3 commented Aug 21, 2023

Currently, YEAT can only accept fastq files. If users provide fasta files, FastQC will crash because there are no quality scores available. Either convert fasta files to fastq or prevent users to pass them in.

If convert:

seqtk seq -F '#' in.fa > out.fq
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