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ypriverolypriverol
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Merge pull request #615 from ypriverol/dev
update quantms-utils 0.0.24 & pmultiqc 0.0.39
2 parents 447d8f1 + 57fd276 commit 937c011

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+16
-16
lines changed

8 files changed

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lines changed

‎modules/local/diann/convert_results/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@ process CONVERT_RESULTS {
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label 'process_medium'
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.23--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.23--pyh7e72e81_0' }"
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.24--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.24--pyh7e72e81_0' }"
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input:
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path(report)

‎modules/local/diann/generate_cfg/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@ process GENERATE_CFG {
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label 'process_tiny'
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.23--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.23--pyh7e72e81_0' }"
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.24--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.24--pyh7e72e81_0' }"
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input:
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val(meta)

‎modules/local/pmultiqc/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -2,8 +2,8 @@ process PMULTIQC {
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label 'process_high'
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/pmultiqc:0.0.38--pyhdfd78af_0' :
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'biocontainers/pmultiqc:0.0.38--pyhdfd78af_0' }"
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'https://depot.galaxyproject.org/singularity/pmultiqc:0.0.39--pyhdfd78af_0' :
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'biocontainers/pmultiqc:0.0.39--pyhdfd78af_0' }"
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input:
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path 'results/*'

‎modules/local/preprocess_expdesign/main.nf‎

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Original file line numberDiff line numberDiff line change
@@ -7,8 +7,8 @@ process PREPROCESS_EXPDESIGN {
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label 'process_tiny'
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.23--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.23--pyh7e72e81_0' }"
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.24--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.24--pyh7e72e81_0' }"
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input:
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path design

‎modules/local/samplesheet_check/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -4,8 +4,8 @@ process SAMPLESHEET_CHECK {
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label 'process_tiny'
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.23--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.23--pyh7e72e81_0' }"
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.24--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.24--pyh7e72e81_0' }"
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input:
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path input_file

‎modules/local/utils/extract_sample/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@ process GET_SAMPLE {
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label 'process_low'
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.23--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.23--pyh7e72e81_0' }"
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.24--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.24--pyh7e72e81_0' }"
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input:

‎modules/local/utils/mzml_statistics/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -4,8 +4,8 @@ process MZML_STATISTICS {
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label 'process_single'
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.23--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.23--pyh7e72e81_0' }"
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.24--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.24--pyh7e72e81_0' }"
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input:
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tuple val(meta), path(ms_file)

‎modules/local/utils/psm_conversion/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@ process PSM_CONVERSION {
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label 'process_medium'
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.23--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.23--pyh7e72e81_0' }"
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'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.24--pyh7e72e81_0' :
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'biocontainers/quantms-utils:0.0.24--pyh7e72e81_0' }"
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input:

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