-
Notifications
You must be signed in to change notification settings - Fork 11
/
Copy pathtest_database_manager.py
607 lines (512 loc) · 20.3 KB
/
test_database_manager.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
"""Tests for DatabaseManager."""
from __future__ import annotations
import asyncio
from pathlib import Path
import adaptive
import pytest
import zmq
from adaptive_scheduler._server_support.database_manager import (
DatabaseManager,
SimpleDatabase,
_DBEntry,
_ensure_str,
)
from adaptive_scheduler.utils import smart_goal
from .helpers import send_message
def test_simple_database_init_and_save(tmp_path: Path) -> None:
"""Test initializing and saving a SimpleDatabase instance."""
db_fname = tmp_path / "test_db.json"
db = SimpleDatabase(db_fname)
assert db.all() == []
db._save()
assert db_fname.exists()
def test_simple_database_insert_multiple(tmp_path: Path) -> None:
"""Test inserting multiple entries into the database."""
db_fname = tmp_path / "test_db.json"
db = SimpleDatabase(db_fname)
entries = [
_DBEntry(fname="file1.txt"),
_DBEntry(fname="file2.txt"),
_DBEntry(fname="file3.txt"),
]
db.insert_multiple(entries)
assert len(db.all()) == 3
def test_simple_database_update(tmp_path: Path) -> None:
"""Test updating entries in the database."""
db_fname = tmp_path / "test_db.json"
db = SimpleDatabase(db_fname)
entries = [
_DBEntry(fname="file1.txt"),
_DBEntry(fname="file2.txt"),
_DBEntry(fname="file3.txt"),
]
db.insert_multiple(entries)
db.update({"is_done": True}, indices=[1])
assert db.all()[1].is_done is True
def test_simple_database_count(tmp_path: Path) -> None:
"""Test counting entries in the database."""
db_fname = tmp_path / "test_db.json"
db = SimpleDatabase(db_fname)
entries = [
_DBEntry(fname="file1.txt", is_done=True),
_DBEntry(fname="file2.txt"),
_DBEntry(fname="file3.txt", is_done=True),
]
db.insert_multiple(entries)
count_done = db.count(lambda entry: entry.is_done)
assert count_done == 2
def test_simple_database_get_and_contains(tmp_path: Path) -> None:
"""Test getting and checking for entries in the database."""
db_fname = tmp_path / "test_db.json"
db = SimpleDatabase(db_fname)
entries = [
_DBEntry(fname="file1.txt"),
_DBEntry(fname="file2.txt"),
_DBEntry(fname="file3.txt"),
]
db.insert_multiple(entries)
entry = db.get(lambda entry: entry.fname == "file2.txt")
assert entry is not None
assert entry.fname == "file2.txt"
assert not db.contains(lambda entry: entry.fname == "file4.txt")
def test_simple_database_get_all(tmp_path: Path) -> None:
"""Test getting all entries in the database."""
db_fname = tmp_path / "test_db.json"
db = SimpleDatabase(db_fname)
entries = [
_DBEntry(fname="file1.txt", is_done=True),
_DBEntry(fname="file2.txt"),
_DBEntry(fname="file3.txt", is_done=True),
]
db.insert_multiple(entries)
done_entries = db.get_all(lambda entry: entry.is_done)
assert len(done_entries) == 2
assert done_entries[0][1].fname == "file1.txt"
assert done_entries[1][1].fname == "file3.txt"
@pytest.mark.asyncio()
async def test_database_manager_start_and_cancel(db_manager: DatabaseManager) -> None:
"""Test starting and canceling the DatabaseManager."""
db_manager.start()
await asyncio.sleep(0.1) # Give it some time to start
assert db_manager.is_started
with pytest.raises(Exception, match="already started"):
db_manager.start()
result = db_manager.cancel()
assert result is not None
with pytest.raises(asyncio.InvalidStateError): # noqa: PT012
assert db_manager.task is not None
assert db_manager.task.result()
def test_database_manager_n_done(db_manager: DatabaseManager) -> None:
"""Test the number of done jobs."""
assert db_manager.n_done() == 0
def test_smart_goal(learners: list) -> None:
"""Test empty learners didn't reach the goal."""
goal = smart_goal(100, learners)
assert not goal(learners[0])
assert not goal(learners[1])
goal = smart_goal(0, learners)
assert goal(learners[0])
def test_database_manager_create_empty_db(db_manager: DatabaseManager) -> None:
"""Test creating an empty database."""
db_manager.create_empty_db()
assert db_manager._db is not None
assert Path(db_manager.db_fname).exists()
n_learners = 2
assert len(db_manager._db.all()) == n_learners
def test_database_manager_as_dicts(
db_manager: DatabaseManager,
fnames: list[Path] | list[str],
) -> None:
"""Test getting the database as a list of dictionaries."""
db_manager.create_empty_db()
assert db_manager.as_dicts() == [
{
"fname": _ensure_str(fnames[0]),
"is_pending": False,
"is_done": False,
"job_id": None,
"job_name": None,
"log_fname": None,
"output_logs": [],
"start_time": None,
"depends_on": [],
},
{
"fname": _ensure_str(fnames[1]),
"is_pending": False,
"is_done": False,
"job_id": None,
"job_name": None,
"log_fname": None,
"output_logs": [],
"start_time": None,
"depends_on": [],
},
]
@pytest.mark.asyncio()
async def test_database_manager_dispatch_start_stop(
db_manager: DatabaseManager,
learners: list[adaptive.Learner1D]
| list[adaptive.BalancingLearner]
| list[adaptive.SequenceLearner],
fnames: list[str] | list[Path],
) -> None:
"""Test starting and stopping jobs using the dispatch method."""
db_manager.learners, db_manager.fnames = learners, fnames
db_manager.create_empty_db()
index, _fname = db_manager._choose_fname()
db_manager._confirm_submitted(index, "test_job")
assert index == 0 # The first learner is chosen
start_request = ("start", "1000", "log_1000.txt", "test_job")
fname = db_manager._dispatch(start_request) # type: ignore[arg-type]
assert fname == _fname
assert fname in _ensure_str(db_manager.fnames)
if isinstance(learners[0], adaptive.BalancingLearner):
assert isinstance(fname, list)
assert isinstance(fname[0], str)
else:
assert isinstance(fname, str)
stop_request = ("stop", fname)
db_manager._dispatch(stop_request)
assert db_manager._db is not None
entry = db_manager._db.get(lambda entry: entry.fname == fname)
assert entry is not None
assert entry.job_id == "1000"
assert entry.is_done is True
@pytest.mark.asyncio()
async def test_database_manager_start_and_update(
socket: zmq.asyncio.Socket,
db_manager: DatabaseManager,
fnames: list[str] | list[Path],
) -> None:
"""Test starting and updating jobs."""
db_manager.create_empty_db()
db_manager.start()
await asyncio.sleep(0.1) # Give it some time to start
job_id, log_fname, job_name = "1000", "log.log", "job_name"
# Choose fname for "job_name" and tell the DB the job is launched
index, _fname = db_manager._choose_fname()
db_manager._confirm_submitted(index, job_name)
# Send a start message to the DatabaseManager
start_message = ("start", job_id, log_fname, job_name)
fname = await send_message(socket, start_message)
assert fname == _fname
# Check if the correct fname is returned
assert fname == _ensure_str(fnames[0]), fname
# Check that the database is updated correctly
assert db_manager._db is not None
entry = db_manager._db.get(lambda entry: entry.fname == fname)
assert entry is not None
assert entry.job_id == job_id
assert entry.log_fname == log_fname
assert entry.job_name == job_name
# Say that the job is still running
queue = {"1000": {"job_id": job_id, "job_name": job_name}}
db_manager.update(queue)
# Check that the database is the same
entry = db_manager._db.get(lambda entry: entry.fname == fname)
assert entry is not None
assert entry.job_id == job_id
assert entry.log_fname == log_fname
assert entry.job_name == job_name
# Say that the job is died
queue = {}
db_manager.update(queue)
# Check that the database is updated correctly
entry = db_manager._db.get(lambda entry: entry.fname == fname)
assert entry is not None
assert entry.job_id is None
@pytest.mark.asyncio()
async def test_database_manager_start_stop(
socket: zmq.asyncio.Socket,
db_manager: DatabaseManager,
fnames: list[str] | list[Path],
) -> None:
"""Test starting and stopping jobs."""
db_manager.create_empty_db()
db_manager.start()
await asyncio.sleep(0.1) # Give it some time to start
assert db_manager.task is not None
job_id, log_fname, job_name = "1000", "log.log", "job_name"
# Choose fname for "job_name" and tell the DB the job is launched
index, _ = db_manager._choose_fname()
db_manager._confirm_submitted(index, job_name)
# Send a start message to the DatabaseManager
start_message = ("start", job_id, log_fname, job_name)
fname = await send_message(socket, start_message)
# Try starting again:
exception = await send_message(socket, start_message)
assert "The job_id 1000 already exists in the database and runs" in str(exception)
assert fname == _ensure_str(fnames[0]), fname
assert db_manager._db is not None
# Check that the database is updated correctly
entry = db_manager._db.get(lambda entry: entry.fname == fname)
assert entry is not None
assert entry.job_id == job_id
assert entry.log_fname == log_fname
assert entry.job_name == job_name
# Check that task is still running
assert db_manager.task is not None
assert not db_manager.task.done()
# Send a stop message to the DatabaseManager
stop_message = ("stop", fname)
reply = await send_message(socket, stop_message)
assert reply is None
assert db_manager._db is not None
entry = db_manager._db.get(lambda entry: entry.fname == _ensure_str(fnames[0]))
assert entry is not None
assert entry.job_id == job_id
# Start and stop the learner2
index2, _ = db_manager._choose_fname()
job_id2, job_name2 = "1001", "job_name2"
start_message2 = ("start", job_id2, "log2.log", job_name2)
db_manager._confirm_submitted(index2, job_name2)
fname = await send_message(socket, start_message2)
assert fname == _ensure_str(fnames[1])
# Send a stop message to the DatabaseManager
stop_message = ("stop", fname)
reply = await send_message(socket, stop_message)
assert reply is None
# Check that the database is updated correctly
entry = db_manager._db.get(lambda entry: entry.fname == _ensure_str(fnames[1]))
assert entry is not None
assert entry.job_id == job_id2
assert entry.job_name == job_name2
with pytest.raises(zmq.error.Again, match="Resource temporarily unavailable"):
await send_message(socket, start_message)
@pytest.mark.asyncio()
async def test_database_manager_stop_request_and_requests(
socket: zmq.asyncio.Socket,
db_manager: DatabaseManager,
fnames: list[str] | list[Path],
) -> None:
"""Test stopping jobs using stop_request and stop_requests methods."""
db_manager.create_empty_db()
db_manager.start()
await asyncio.sleep(0.1) # Give it some time to start
assert db_manager.task is not None
assert db_manager._db is not None
# Start a job for learner1
job_id1, log_fname1, job_name1 = "1000", "log1.log", "job_name1"
start_message1 = ("start", job_id1, log_fname1, job_name1)
_index1, _fname1 = db_manager._choose_fname()
db_manager._confirm_submitted(_index1, job_name1)
fname1 = await send_message(socket, start_message1)
assert fname1 == _fname1
assert fname1 == _ensure_str(fnames[0]), fname1
e = db_manager._db.get(lambda entry: entry.fname == fname1)
assert isinstance(e, _DBEntry)
assert e.job_id == job_id1
# Start a job for learner2
job_id2, log_fname2, job_name2 = "1001", "log2.log", "job_name2"
start_message2 = ("start", job_id2, log_fname2, job_name2)
_index2, _fname2 = db_manager._choose_fname()
db_manager._confirm_submitted(_index2, job_name2)
fname2 = await send_message(socket, start_message2)
assert fname2 == _fname2
assert fname2 == _ensure_str(fnames[1]), fname2
e = db_manager._db.get(lambda entry: entry.fname == fname2)
assert isinstance(e, _DBEntry)
assert e.job_id == job_id2
# Stop the job for learner1 using _stop_request
db_manager._stop_request(fname1)
entry = db_manager._db.get(lambda entry: entry.fname == fname1)
assert entry is not None
assert entry.job_id == job_id1, (fname1, fname2)
assert entry.is_done is True
assert entry.job_name == job_name1
# Stop the job for learner2 using _stop_requests
db_manager._stop_requests([fname2])
entry = db_manager._db.get(lambda entry: entry.fname == fname2)
assert entry is not None
assert entry.job_id == job_id2, (fname1, fname2)
assert entry.is_done is True
assert entry.job_name == job_name2
def test_job_failure_after_start_request(db_manager: DatabaseManager) -> None:
"""Ensure jobs that fail after they send a start request are updated in the DB."""
db_manager.create_empty_db()
assert not db_manager.failed
index, _ = db_manager._choose_fname()
db_manager._confirm_submitted(index, "job1")
# job is launched and appears in queue
db_manager.update({"1": {"job_name": "job1"}})
# job reports back that it started
db_manager._start_request("1", "log", "job1")
# job dies, disappearing from queue
db_manager.update({})
assert db_manager.failed
def test_job_failure_before_start_request(db_manager: DatabaseManager) -> None:
"""Ensure jobs that fail before they send a start request are updated in the DB.
This is a regression test against
https://github.com/basnijholt/adaptive-scheduler/issues/216
"""
db_manager.create_empty_db()
assert not db_manager.failed
index, _ = db_manager._choose_fname()
# Job is launched
db_manager._confirm_submitted(index, "job1")
# Job appears in queue, and one of our "update" calls sees it
db_manager.update({"1": {"job_name": "job1"}})
# Job dies, disappearing from queue
db_manager.update({})
assert db_manager.failed
def test_job_failure_before_start_request_slow_update(
db_manager: DatabaseManager,
) -> None:
"""Ensure jobs that fail before they send a start request are updated in the DB, even if db manager updates slowly.
This is a regression test against
https://github.com/basnijholt/adaptive-scheduler/issues/216
"""
db_manager.create_empty_db()
assert not db_manager.failed
index, _ = db_manager._choose_fname()
# Job is launched...
db_manager._confirm_submitted(index, "job1")
# But dies before the next time our DB updates.
db_manager.update({})
assert db_manager.failed
def test_job_failure_before_start_request_interleaved(
db_manager: DatabaseManager,
) -> None:
"""Ensure jobs that fail before they send a start request are updated in the DB, even if db manager updates slowly.
This is a regression test against
https://github.com/basnijholt/adaptive-scheduler/issues/216
"""
db_manager.create_empty_db()
assert not db_manager.failed
# fname is chosen...
index, _ = db_manager._choose_fname()
# Database is updated by another task efore launch is confirmed;
# this does not result in the job being marked as failed.
db_manager.update({})
assert not db_manager.failed
# Launch is later confirmed...
db_manager._confirm_submitted(index, "job1")
# But job is still not in queue...
db_manager.update({})
# which means that it will be marked as failed
assert db_manager.failed
def test_job_failure_before_start_request_interleaved2(
db_manager: DatabaseManager,
) -> None:
"""Ensure jobs that fail before they send a start request are updated in the DB, even if db manager updates slowly.
This is a regression test against
https://github.com/basnijholt/adaptive-scheduler/issues/216
"""
db_manager.create_empty_db()
assert not db_manager.failed
# fname is chosen...
index, _ = db_manager._choose_fname()
# Database is updated after job is in the queue, but before
# launch is confirmed by the job manager
db_manager.update({"1": {"job_name": "job1"}})
assert not db_manager.failed
# launch is confirmed by job manager
db_manager._confirm_submitted(index, "job1")
# job disappears from queue...
db_manager.update({})
# which means that it will be marked as failed
assert db_manager.failed
@pytest.mark.parametrize(
("input_list", "expected_output"),
[
# Test with a list of strings
(["path1", "path2", "path3", "path4"], ["path1", "path2", "path3", "path4"]),
# Test with a list of Path objects
(
[Path("path1"), Path("path2"), Path("path3"), Path("path4")],
["path1", "path2", "path3", "path4"],
),
# Test with a list of lists of strings
(
[["path1", "path2"], ["path3", "path4"]],
[["path1", "path2"], ["path3", "path4"]],
),
# Test with a list of lists of Path objects
(
[[Path("path1"), Path("path2")], [Path("path3"), Path("path4")]],
[["path1", "path2"], ["path3", "path4"]],
),
# Test empty
([], []),
],
)
def test_ensure_str(
input_list: list[str] | list[list[str]] | list[Path] | list[list[Path]],
expected_output: list[str] | list[list[str]],
) -> None:
"""Test the _ensure_str function."""
output_list = _ensure_str(input_list)
assert output_list == expected_output
@pytest.mark.parametrize(
"invalid_input",
[
# Test with an invalid input
{1, 2},
10,
10.0,
],
)
def test_ensure_str_invalid_input(invalid_input: list[str]) -> None:
"""Test the _ensure_str function with an invalid input."""
with pytest.raises(ValueError, match="Invalid input:"):
_ensure_str(invalid_input) # type: ignore[arg-type]
@pytest.mark.asyncio()
async def test_dependencies(
db_manager: DatabaseManager,
fnames: list[str] | list[Path],
socket: zmq.asyncio.Socket,
) -> None:
"""Test the dependencies between learners."""
db_manager.dependencies = {1: [0]}
db_manager.create_empty_db()
db_manager.start()
await asyncio.sleep(0.1) # Give it some time to start
assert db_manager.task is not None
assert db_manager._db is not None
# Start a job for learner1
job_id1, log_fname1, job_name1 = "1000", "log1.log", "job_name1"
start_message1 = ("start", job_id1, log_fname1, job_name1)
_index1, _fname1 = db_manager._choose_fname()
db_manager._confirm_submitted(_index1, job_name1)
fname1 = await send_message(socket, start_message1)
assert fname1 == _fname1
assert fname1 == _ensure_str(fnames[0]), fname1
e = db_manager._db.get(lambda entry: entry.fname == fname1)
assert isinstance(e, _DBEntry)
assert e.job_id == job_id1
# Try getting a new job
for _ in range(2): # try twice
index, _ = db_manager._choose_fname()
assert index == -1 # means we are waiting for the dependency to finish
# Mark the job for learner1 as done
db_manager._stop_request(fname1)
entry = db_manager._db.get(lambda entry: entry.fname == fname1)
assert entry is not None
assert entry.job_id == job_id1
assert entry.is_done is True
assert entry.job_name == job_name1
# Try getting a new job
_index2, _fname2 = db_manager._choose_fname()
# Start a job for learner2
job_id2, log_fname2, job_name2 = "1001", "log2.log", "job_name2"
start_message2 = ("start", job_id2, log_fname2, job_name2)
db_manager._confirm_submitted(_index2, job_name2)
fname2 = await send_message(socket, start_message2)
assert fname2 == _fname2
assert fname2 == _ensure_str(fnames[1])
e = db_manager._db.get(lambda entry: entry.fname == fname2)
assert isinstance(e, _DBEntry)
assert e.job_id == job_id2
# Stop the job for learner2 using _stop_requests
db_manager._stop_requests([fname2])
entry = db_manager._db.get(lambda entry: entry.fname == fname2)
assert entry is not None
assert entry.job_id == job_id2, (fname1, fname2)
assert entry.is_done is True
assert entry.job_name == job_name2
with pytest.raises(
RuntimeError,
match="Requested a new job but no more learners to run in the database.",
):
db_manager._choose_fname()