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references.bib
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@article{See2019,
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@article{Liang2023,
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@article{Wen2023,
author = {Wen, X. and Zhong, S.},
year = {2023},
title = {Alu transposable elements rewire enhancer-promoter network through RNA pairing},
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@article{Traag2019,
author = {Traag, V. A. and Waltman, L. and van Eck, N. J.},
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@article{Blondel2008,
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}
@article{Cai2020,
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@article{Csardi2006,
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eprint = {1695},
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@misc{Pedersen2023,
author = {Pedersen, T.},
year = {2023},
title = {tidygraph: A Tidy API for Graph Manipulation},
url = {https://tidygraph.data-imaginist.com},
repository = {https://github.com/thomasp85/tidygraph}
}
@article{Koks2021,
author = {Koks, S. and Pfaff, A. L. and Bubb, V. J. and Quinn, J. P.},
year = {2021},
title = {Expression Quantitative Trait Loci (eQTLs) Associated with Retrotransposons Demonstrate their Modulatory Effect on the Transcriptome},
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@article{Lee2023,
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title = {Characterization of altered molecular mechanisms in Parkinson’s disease through cell type–resolved multiomics analyses},
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@article{Corces2020,
author = {Corces, M. R. and Shcherbina, A. and Kundu, S. and Gloudemans, M. J. and Frésard, L. and Granja, J. M. and Montine, T. J.},
year = {2020},
title = {Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases},
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@article{Mustafin2020,
author = {Mustafin, R. N. and Khusnutdinova, E. K.},
year = {2020},
title = {Involvement of transposable elements in neurogenesis},
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pages = {209--218},
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@misc{GEO,
title = {Home - Geo - NCBI},
url = {https://www.ncbi.nlm.nih.gov/geo/}
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@article{Storer2021,
author = {Storer, J. and Hubley, R. and Rosen, J. and Wheeler, T. J. and Smit, A. F. A.},
year = {2021},
title = {The Dfam community resource of transposable element families, sequence models, and genome annotations},
journal = {Mobile DNA},
volume = {12},
number = {2},
doi = {https://doi.org/10.1186/s13100-020-00230-y}
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@article{Corces2020News,
author = {Corces, M. R. and Shcherbina, A. and Kundu, S. and Gloudemans, M. J. and Frésard, L. and Granja, J. M. and Montine, T. J.},
year = {2020},
title = {Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases},
journal = {Nature News},
url = {https://www.nature.com/articles/s41588-020-00721-x#Sec47}
}
@Manual{Mersmann2023,
title = {microbenchmark: Accurate Timing Functions},
author = {Mersmann, O. and Beleites, C. and Hurling, R. and Friedman, A. and Ulrich, J.},
year = {2023},
note = {R package version 1.4.10},
url = {https://github.com/joshuaulrich/microbenchmark/},
}