From 93f7bdf30c0bef9e1fdd075b33a27e0e9c73b210 Mon Sep 17 00:00:00 2001
From: Ryan Harvey <ryanh412@gmail.com>
Date: Wed, 6 Nov 2024 10:48:02 -0500
Subject: [PATCH] fix data types

---
 preProcessing/script_CutDat.m | 76 +++++++++++++++++------------------
 1 file changed, 38 insertions(+), 38 deletions(-)

diff --git a/preProcessing/script_CutDat.m b/preProcessing/script_CutDat.m
index 4408db9..e877709 100644
--- a/preProcessing/script_CutDat.m
+++ b/preProcessing/script_CutDat.m
@@ -2,7 +2,7 @@
 % Use this script if you want to remove the end of your dat files (ephys and other input files).
 % Just set the number of channels and the cutoff time (max time) (in seconds)
 % in the lines below and run the script!
-% The original files will remain but renamed to append _original. Feel free 
+% The original files will remain but renamed to append _original. Feel free
 % to remove them afterwards.
 %
 % Copyright (C) 2021-2023 Ralitsa Todorova
@@ -14,55 +14,55 @@
 
 
 nChannels = ?; % set this manually
-maxTime = ; % set manually: this should be in seconds
+maxTime =; % set manually: this should be in seconds
 
 % rename files: do this only once as doing it more than once would remove the original files!!!
-if exist('amplifier_original.dat','file')
+if exist('amplifier_original.dat', 'file')
     error('amplifier_original.dat file already exists. Don''t run script again, it might overwrite your original files!!!')
 else
-    movefile('auxiliary.dat','auxiliary_original.dat');
-    movefile('digitalin.dat','digitalin_original.dat'); 
-    movefile('analogin.dat','analogin_original.dat');
-    movefile('time.dat','time_original.dat');
-    movefile('amplifier.dat','amplifier_original.dat');
+    movefile('auxiliary.dat', 'auxiliary_original.dat');
+    movefile('digitalin.dat', 'digitalin_original.dat');
+    movefile('analogin.dat', 'analogin_original.dat');
+    movefile('time.dat', 'time_original.dat');
+    movefile('amplifier.dat', 'amplifier_original.dat');
 end
 
-file = memmapfile('amplifier_original.dat','Format','int16','Writable',false);
-data = reshape(file.data,nChannels,[]);
-originalSize = size(data,2);
-data = data(:,1:ceil(maxTime*20000));
-f = fopen('amplifier.dat','w'); % new file should be test.dat
-fwrite(f,data(:),'int16');
+file = memmapfile('amplifier_original.dat', 'Format', 'int16', 'Writable', false);
+data = reshape(file.data, nChannels, []);
+originalSize = size(data, 2);
+data = data(:, 1:ceil(maxTime*20000));
+f = fopen('amplifier.dat', 'w'); % new file should be test.dat
+fwrite(f, data(:), 'int16');
 fclose(f);
 
-file = memmapfile('auxiliary_original.dat','Format','int16','Writable',false);
-nChannels = length(file.data)/originalSize;
-data = reshape(file.data,nChannels,[]);
-data = data(:,1:ceil(maxTime*20000));
-f = fopen('auxiliary.dat','w'); % new file should be test.dat
-fwrite(f,data(:),'int16');
+file = memmapfile('auxiliary_original.dat', 'Format', 'uint16', 'Writable', false);
+nChannels = length(file.data) / originalSize;
+data = reshape(file.data, nChannels, []);
+data = data(:, 1:ceil(maxTime*20000));
+f = fopen('auxiliary.dat', 'w'); % new file should be test.dat
+fwrite(f, data(:), 'uint16');
 fclose(f);
 
-file = memmapfile('digitalin_original.dat','Format','int16','Writable',false);
-nChannels = length(file.data)/originalSize;
-data = reshape(file.data,nChannels,[]);
-data = data(:,1:ceil(maxTime*20000));
-f = fopen('digitalin.dat','w'); % new file should be test.dat
-fwrite(f,data(:),'int16');
+file = memmapfile('digitalin_original.dat', 'Format', 'uint16', 'Writable', false);
+nChannels = length(file.data) / originalSize;
+data = reshape(file.data, nChannels, []);
+data = data(:, 1:ceil(maxTime*20000));
+f = fopen('digitalin.dat', 'w'); % new file should be test.dat
+fwrite(f, data(:), 'uint16');
 fclose(f);
 
-file = memmapfile('time_original.dat','Format','int16','Writable',false);
-nChannels = length(file.data)/originalSize;
-data = reshape(file.data,nChannels,[]);
-data = data(:,1:ceil(maxTime*20000));
-f = fopen('time.dat','w'); % new file should be test.dat
-fwrite(f,data(:),'int16');
+file = memmapfile('time_original.dat', 'Format', 'int32', 'Writable', false);
+nChannels = length(file.data) / originalSize;
+data = reshape(file.data, nChannels, []);
+data = data(:, 1:ceil(maxTime*20000));
+f = fopen('time.dat', 'w'); % new file should be test.dat
+fwrite(f, data(:), 'int32');
 fclose(f);
 
-file = memmapfile('analogin_original.dat','Format','int16','Writable',false);
-nChannels = length(file.data)/originalSize;
-data = reshape(file.data,nChannels,[]);
-data = data(:,1:ceil(maxTime*20000));
-f = fopen('analogin.dat','w'); % new file should be test.dat
-fwrite(f,data(:),'int16');
+file = memmapfile('analogin_original.dat', 'Format', 'uint16', 'Writable', false);
+nChannels = length(file.data) / originalSize;
+data = reshape(file.data, nChannels, []);
+data = data(:, 1:ceil(maxTime*20000));
+f = fopen('analogin.dat', 'w'); % new file should be test.dat
+fwrite(f, data(:), 'uint16');
 fclose(f);