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arunavanag591arunavanag591
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review analysis and figures
1 parent 47f1944 commit fb40ee8

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-349
lines changed

‎data_exploration/dataClassification.ipynb

+7-14
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@@ -46,7 +46,7 @@
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"pd.options.mode.chained_assignment = None\n",
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"\n",
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"import networkx as nx\n",
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"import community.community_louvain as community_louvain # pip install community"
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"# import community.community_louvain as community_louvain # pip install community"
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]
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},
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{
@@ -1473,17 +1473,10 @@
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" ax=ax1,dodge=True, size=5)\n",
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"ax1.set_xlabel('# Parameters')\n",
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"ax1.set_ylabel('$AIC$')\n",
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"ax1.grid(False)p.ma.log2(probs)).sum()\n",
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"​\n",
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" return info\n",
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"​\n",
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"mutual_info(traindf.mc_mean,traindf.wd_mean)\n",
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"/tmp/ipykernel_136646/267784704.py:13: RuntimeWarning: invalid value encountered in true_divide\n",
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" probs = joint_prob / (np.reshape(probs_x, [-1, 1]) * probs_y)\n",
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"Out[23]:\n",
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"8.442297294007197\n",
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"\n",
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"ax1.scatter(np.arange(0,len(aic_table),1),aic_min,c='red', marker='o', facecolor=None,s=100)\n",
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"ax1.grid(False)\n",
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"\n",
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"\n",
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"# ​ax1.scatter(np.arange(0,len(aic_table),1),aic_min,c='red', marker='o', facecolor=None,s=100)\n",
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"ax1.plot(np.arange(0,len(aic_table),1),aic_min,c='red',alpha=0.2)\n",
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"\n",
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"ax1.set_xticklabels(np.arange(1,len(aic_table)+1,1),rotation=90)\n",
@@ -1847,9 +1840,9 @@
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],
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"metadata": {
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"kernelspec": {
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"display_name": "pymac",
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"display_name": "vscode38kernel",
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"language": "python",
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"name": "pymac"
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"name": "pywork38"
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},
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"language_info": {
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"codemirror_mode": {

‎data_exploration/dataInterpolation.ipynb

+24-15
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@@ -64,19 +64,19 @@
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},
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{
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"cell_type": "code",
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"execution_count": 54,
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"execution_count": 2,
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"['OctoberDesert1020_0.h5', 'OctoberDesert1020_1.h5', 'OctoberDesert1020_2.h5', 'OctoberDesert1020_3.h5', 'OctoberDesert1020_4.h5']\n"
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"['OctoberDesert1020_0.h5', 'OctoberDesert1020_1.h5', 'OctoberDesert1020_2.h5', 'OctoberDesert1020_3.h5']\n"
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]
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}
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],
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"source": [
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"folder_path = '../../data/BagsOctober/Run05/h5/'\n",
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"folder_path = '../../data/BagsOctober/Run01/h5/'\n",
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"\n",
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"file_list = [file for file in os.listdir(folder_path) if file.endswith('.h5')]\n",
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"sorted_file_list = sorted(file_list) # Sort the file list if needed\n",
@@ -111,7 +111,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 57,
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"execution_count": 3,
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"metadata": {},
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"outputs": [],
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"source": [
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},
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{
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"cell_type": "code",
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"execution_count": 58,
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"execution_count": 4,
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"metadata": {},
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"outputs": [],
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"source": [
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},
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{
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"cell_type": "code",
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"execution_count": 59,
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"execution_count": 5,
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"metadata": {
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"scrolled": true
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},
@@ -180,7 +180,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 60,
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"execution_count": 6,
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"metadata": {},
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"outputs": [],
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"source": [
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},
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{
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"cell_type": "code",
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"execution_count": 61,
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"execution_count": 7,
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"dt Odor: 0.005000114440917969\n",
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"dt Wind: 0.02499699592590332\n",
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"dt Odor: 0.0049953460693359375\n",
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"dt Wind: 0.024998903274536133\n",
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"dt Gps: 0.20000004768371582\n",
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"dt Gps Vel: 0.20000004768371582\n",
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"dt Imu: 0.003999948501586914\n"
@@ -242,7 +242,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 62,
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"execution_count": 8,
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"metadata": {},
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"outputs": [],
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"source": [
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},
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{
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"cell_type": "code",
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"execution_count": 63,
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"execution_count": 9,
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"metadata": {},
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"outputs": [],
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"source": [
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},
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{
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"cell_type": "code",
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"execution_count": 64,
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"execution_count": 10,
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"metadata": {},
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"outputs": [],
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"source": [
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"# odor.to_hdf('~/Documents/Myfiles/DataAnalysis/data/Sprints/HighRes/Forest/ForestDataJuly_S1.h5',key='odor', mode='w')"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 12,
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"metadata": {},
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"outputs": [],
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"source": [
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"odor['time']=odor.master_time-odor.master_time[0]"
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
@@ -1071,9 +1080,9 @@
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3 (ipykernel)",
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"display_name": "vscode38kernel",
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"language": "python",
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"name": "python3"
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"name": "pywork38"
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},
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"language_info": {
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"codemirror_mode": {

‎data_exploration/dataKalmanFiltering.ipynb

+6-6
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‎data_exploration/figure/Supplemental/klmsupplemental.ipynb

+3-3
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‎data_exploration/figure/Supplemental/lookbacktime.ipynb

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@@ -81,7 +81,7 @@
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"outputs": [
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{
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"data": {
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"image/png": 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RmP8A35KePnUHdxEAAAAASUVORK5CYII=\n",
84+
"image/png": 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RmP8A35KePnUHdxEAAAAASUVORK5CYII=",
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"text/plain": [
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"<Figure size 595.276x841.89 with 1 Axes>"
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]
@@ -151,9 +151,9 @@
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3 (ipykernel)",
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"display_name": "vscode38kernel",
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"language": "python",
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"name": "python3"
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"name": "pywork38"
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},
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"language_info": {
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"codemirror_mode": {

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