requirements.txt

anndata==0.11.3
copasi_basico==0.78
coverage==7.6.4
einops==0.8.0
gdown==5.2.0
gravis==0.1.0
huggingface_hub==0.26.5
hydra-core==1.3.2
h5py==3.13.0
igraph==0.11.8
ipykernel==6.29.5
ipython==8.32.0
joblib==1.4.2
langchain==0.3.7
langchain-community==0.3.5
langchain-core==0.3.40
langchain-experimental==0.3.3
langchain-nvidia-ai-endpoints==0.3.9
langchain-openai==0.3.0
langchain_ollama==0.2.3
langgraph_supervisor==0.0.9
matplotlib==3.9.2
nbformat==5.10.4
openai==1.59.4
ollama==0.4.7
pandas==2.2.3
pcst_fast==1.0.10
plotly==5.24.1
plotly-express==0.4.1
pubchempy==1.0.4
pydantic==2.9.2
pylint==3.3.1
pypdf==5.2.0
pytest==8.3.3
pytest-asyncio==0.25.2
pyzotero==1.6.9
sentence_transformers==3.3.1
seaborn==0.13.2
scanpy==1.11.0
scipy==1.15.2
streamlit==1.39.0
tabulate==0.9.0
torch==2.2.2
torch_geometric==2.6.1
tqdm==4.67.1
transformers==4.48.0
mkdocs==1.6.1
mkdocs-jupyter==0.25.1
mkdocs-material==9.5.47
mkdocstrings-python==1.12.2
mkdocs-include-markdown-plugin==7.1.2
mkdocstrings==0.27.0
streamlit-feedback
umap-learn==0.5.7
PyPDF2==3.0.1