phage.py

#!/usr/bin/env python3
# encoding: utf-8

"""
    Copyright (C) 2019-2020  Andreas Kuster

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
"""

__author__ = "Andreas Kuster"
__copyright__ = "Copyright 2019-2020"
__license__ = "GPL"

class Phage():

    def __init__(self,
                 adsorption_rate: float,
                 c0: int = 1,
                 burst_size = float,
                 death_rate = float):
        """

        :param c0:
        :param adsorption_rate:
        :param burst_size:
        :param death_rate:
        """
        self.c0 = c0
        self.adsorption_rate = adsorption_rate
        self.burst_size = burst_size
        self.death_rate = death_rate
        
        
    def infection_rate(self, host_c, phage_c):
        
        """
        :param host_c: host_concentration
        :return: infection rate
        """
        
        return self.adsorption_rate * phage_c * host_c