.gitignore

# History files
.Rhistory

# Example code in package build process
*-Ex.R

# R data files from past sessions
.Rdata

# RStudio files
.Rproj.user/
*.Rproj

# shinyapps
degeneracy/apps/rsconnect/

# no pdfs
*.pdf

# compilation files
*.bbl
*.gz
*.log
*.xml
*-blx.bib
*.blg
*.aux
*.bcf
*.dvi
*.snm
*.nav

# stupid files
*.m~
*.txt~
.Rproj.user
.DS_store
*.DS_Store

# Jing's code
11/


#too much rdata
code/4x4 model/written/*.Rdata
code/degeneracy/written/
presentations/jsm2016/index_cache/
presentations/amherst/slides_cache/
presentations/asu/slides_cache/
presentations/uva/slides_cache/
presentations/rice/slides_cache/
presentations/samsi/slides_cache/
presentations/ufl/slides_cache/
presentations/uiuc/slides_cache/
presentations/msu/slides_cache/
presentations/coms474/slides_cache/
presentations/msmlc/slides_cache/
presentations/silo_wisc/slides_cache/

#presentation
!presentations/jsm2016/*.pdf
!presentations/jsm2016/images/
!presentations/jsm2016/*.tex
!presentations/amherst/*.pdf
!presentations/amherst/*.tex
!presentations/asu/*.pdf
!presentations/asu/*.tex
!presentations/uva/*.pdf
!presentations/uva/*.tex
!presentations/rice/*.pdf
!presentations/rice/*.tex
!presentations/samsi/*.pdf
!presentations/samsi/*.tex
!presentations/ufl/*.pdf
!presentations/ufl/*.tex
!presentations/uiuc/*.pdf
!presentations/uiuc/*.tex
!presentations/msu/*.pdf
!presentations/msu/*.tex
!presentations/coms474/*.pdf
!presentations/coms474/*.tex
!presentations/resources/images/
!presentations/msmlc/*.pdf
!presentations/msmlc/*.tex
!presentations/silo_wisc/*.tex
!presentations/silo_wisc/*.pdf

#big files
code/degeneracy/apps/results_grid*

#cache
writing/paper-*/_bookdown_files
writing/paper-*.Rproj
writing/resources/data/*.Rdata
writing/resources/data/*.RData
writing/paper-rbm/paper_cache/

#responses
writing/paper-note/letters/
writing/paper-note/previous_submissions/
writing/paper-note/justincase.Rdata
writing/paper-rbm/submission/
writing/paper-rbm/submission.*
writing/paper-rbm/letters/