From 48d4b60e17d7a82ff9ca01a270119355b3588bcc Mon Sep 17 00:00:00 2001 From: John Vivian Date: Wed, 17 Oct 2018 12:44:22 -0700 Subject: [PATCH 1/3] Pin cutadapt version --- cutadapt/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cutadapt/Dockerfile b/cutadapt/Dockerfile index 0790a73..f958cc8 100644 --- a/cutadapt/Dockerfile +++ b/cutadapt/Dockerfile @@ -7,7 +7,7 @@ RUN apt-get update && apt-get install -y \ build-essential \ python-pip -RUN pip install cutadapt +RUN pip install cutadapt==1.18 # Boilerplate RUN mkdir /opt/cutadapt From 25b305f0b748af4864b3b341dbdc73c3f4a4bc05 Mon Sep 17 00:00:00 2001 From: John Vivian Date: Wed, 17 Oct 2018 12:44:33 -0700 Subject: [PATCH 2/3] Move version to 1.18 --- cutadapt/Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cutadapt/Makefile b/cutadapt/Makefile index cb74418..f34b80e 100644 --- a/cutadapt/Makefile +++ b/cutadapt/Makefile @@ -3,7 +3,7 @@ runtime_fullpath = $(realpath runtime) build_tool = runtime-container.DONE git_commit ?= $(shell git log --pretty=oneline -n 1 -- ../cutadapt | cut -f1 -d " ") name = quay.io/ucsc_cgl/cutadapt -tag = 1.9--${git_commit} +tag = 1.18--${git_commit} build: docker build -t ${name}:${tag} . From cbc4b823b64a3765c4eaef16eead9a1c340b95ef Mon Sep 17 00:00:00 2001 From: John Vivian Date: Wed, 17 Oct 2018 12:59:43 -0700 Subject: [PATCH 3/3] Update version in test --- cutadapt/test.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cutadapt/test.py b/cutadapt/test.py index 2d8d29c..11955ca 100644 --- a/cutadapt/test.py +++ b/cutadapt/test.py @@ -9,7 +9,7 @@ class TestCutadapt(unittest.TestCase): def test_docker_call(self): out, err = check_docker_output(tool='quay.io/ucsc_cgl/cutadapt') - self.assertTrue('cutadapt version 1.9' in out) + self.assertTrue('cutadapt version 1.18' in out) def check_docker_output(tool): command = 'docker run ' + tool