DESCRIPTION

Package: QApckg
Type: Package
Title: Quality assessment for Miseq data derived from viral sequencing 
Version: 0.1.0
Author: Alicia Aranda Fernandez
Maintainer: Alicia Aranda <ali.afernandez99@gmail.com>
Description: This package provides a set of functions for NGS data processing, 
  quality analysis, filtering and demultiplexing. These functions are designed
  to be applied in consecutive order on Miseq raw data to obtain a set of 
  intersected haplotypes for each evaluated sample. With these consensus haplotypes 
  different kinds of computations can be made, i.e genotyping, variant calling and
  quasispecies diversity. 
License: CC BY 4.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.0
biocViews:
git_url: <https://github.com/aliafdz/QApckg>
Imports:
    methods,
    ape, 
    stats,
    ltools
Depends:
    R (>= 4.1),
    ShortRead,
    RColorBrewer,
    Biostrings,
    stringr,
    foreach,
    QSutils,
    muscle,
    parallel
Suggests: 
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3