pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <parent>
    <groupId>org.bdgenomics.adam</groupId>
    <artifactId>adam-parent-spark2_2.11</artifactId>
    <version>0.32.0-SNAPSHOT</version>
    <relativePath>../pom.xml</relativePath>
  </parent>

  <artifactId>adam-codegen-spark2_2.11</artifactId>
  <packaging>jar</packaging>
  <name>ADAM_${scala.version.prefix}: Avro-to-Dataset codegen utils</name>
  <properties>
    <timestamp>${maven.build.timestamp}</timestamp>
    <maven.build.timestamp.format>yyyy-MM-dd</maven.build.timestamp.format>
  </properties>
  <build>
    <plugins>
      <!-- disable surefire -->
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-plugin</artifactId>
        <configuration>
          <skipTests>true</skipTests>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>build-helper-maven-plugin</artifactId>
        <executions>
          <execution>
            <id>add-source</id>
            <phase>generate-sources</phase>
            <goals>
              <goal>add-source</goal>
            </goals>
            <configuration>
              <sources>
                <source>src/main/scala</source>
              </sources>
            </configuration>
          </execution>
          <execution>
            <id>add-test-source</id>
            <phase>generate-test-sources</phase>
            <goals>
              <goal>add-test-source</goal>
            </goals>
            <configuration>
              <sources>
                <source>src/test/scala</source>
              </sources>
            </configuration>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <groupId>org.scalatest</groupId>
        <artifactId>scalatest-maven-plugin</artifactId>
        <configuration>
          <reportsDirectory>${project.build.directory}/scalatest-reports</reportsDirectory>
          <junitxml>.</junitxml>
          <filereports>ADAMTestSuite.txt</filereports>
          <!--
              As explained here: http://stackoverflow.com/questions/1660441/java-flag-to-enable-extended-serialization-debugging-info
              The second option allows us better debugging for serialization-based errors.
            -->
          <argLine>-Xmx1024m -Dsun.io.serialization.extendedDebugInfo=true</argLine>
          <stdout>F</stdout>
        </configuration>
        <executions>
          <execution>
            <id>test</id>
            <goals>
              <goal>test</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
    </plugins>
  </build>
  <dependencies>
    <dependency>
      <groupId>org.scala-lang</groupId>
      <artifactId>scala-library</artifactId>
    </dependency>
    <dependency>
      <groupId>org.apache.avro</groupId>
      <artifactId>avro</artifactId>
    </dependency>
    <dependency>
      <groupId>org.scalatest</groupId>
      <artifactId>scalatest_${scala.version.prefix}</artifactId>
      <scope>test</scope>
    </dependency>
  </dependencies>
  <profiles>
    <profile>
      <id>coverage</id>
      <build>
        <plugins>
          <plugin>
            <groupId>org.scoverage</groupId>
            <artifactId>scoverage-maven-plugin</artifactId>
            <configuration>
              <excludedPackages>org.bdgenomics.adam.codegen</excludedPackages>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
  </profiles>
</project>