Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Invalid parameter in configuration file #19

Open
user-tq opened this issue Nov 3, 2022 · 0 comments
Open

Invalid parameter in configuration file #19

user-tq opened this issue Nov 3, 2022 · 0 comments

Comments

@user-tq
Copy link

user-tq commented Nov 3, 2022 

# the database location/dir from annnovar   check if database file exists
database_names = refGene esp6500siv2_all 1000g2015aug avsnp147 dbnsfp30a clinvar_20221030 exac03 dbscsnv11 dbnsfp31a_interpro ensGene knownGene cosmic91 icgc28 gnomad_genome

update the database，clinvar_20190305 to clinvar_20221030，run

python  CancerVar.py -c config.ini

image
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@user-tq