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RESDSQL Instructions

TrsutSQL relies on output from the RESDSQL. So, before running the MaskSQL, you should run the RESDSQL to generate the required file needed by TrsutSQL.

Since RESDSQL is a legacy code, we will use a separate virtual environment to run it.

Requirements

RESDSQL requires python3.8, GCC and CUDA.

On the alliance servers you can use the following command to load the dependencies:

module load StdEnv/2020 python/3.8.10
module load gcc cuda

Installation

Run the following command to setup and install the required python libraries for RESDSQL:

./install_resd.sh

Next, we need to download the

Run RESDSQL

Use the following command to run the RESDSQL:

./run_resd.sh

This command generates the file data/resd_output.json which is used inside the MaskSQL pipeline.

After successful execution of this script, we can run the MaskSQL pipeline.