-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathsub-185823_acq-headmotion2_T1w.html
571 lines (527 loc) · 28.5 KB
/
sub-185823_acq-headmotion2_T1w.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
<?xml version="1.0" encoding="utf-8" ?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="NiReports: https://www.nipreps.org/" />
<title>sub-185823_acq-headmotion2_T1w :: Anatomical MRI report</title>
<script src="https://code.jquery.com/jquery-3.6.0.min.js" integrity="sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4=" crossorigin="anonymous"></script>
<link href="https://cdn.jsdelivr.net/npm/[email protected]/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-rbsA2VBKQhggwzxH7pPCaAqO46MgnOM80zW1RWuH61DGLwZJEdK2Kadq2F9CUG65" crossorigin="anonymous">
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/js/bootstrap.bundle.min.js" integrity="sha384-kenU1KFdBIe4zVF0s0G1M5b4hcpxyD9F7jL+jjXkk+Q2h455rYXK/7HAuoJl+0I4" crossorigin="anonymous"></script>
<script>
var timestamp = Date.now()
function read_form() {
var ds = "unknown";
var sub = "unspecified";
var artifacts = [];
$('#qcartifacts-group input:checked').each(function() {
artifacts.push($(this).attr('name'));
});
var rating = $('#qcslider').val();
var payload = {
'dataset': ds,
'subject': sub,
'rating': rating,
'artifacts': artifacts,
'time_sec': (Date.now() - timestamp) / 1000,
'confidence': $('#qcextra-confidence').val(),
'comments': $('#qcextra-comments').val()
};
var file = new Blob([JSON.stringify(payload)], {type: 'text/json'});
$('#btn-download').attr('href', URL.createObjectURL(file));
$('#btn-download').attr('download', payload['dataset'] + "_" + payload['subject'] + ".json");
return payload
};
function toggle_rating() {
if ($('#qcrating-menu').hasClass('d-none')) {
$('#qcrating-menu').removeClass('d-none');
$('#qcrating-toggler').prop('checked', true);
} else {
$('#qcrating-menu').addClass('d-none');
$('#qcrating-toggler').prop('checked', false);
}
};
$(window).on('load',function(){
var authorization = $('#btn-post').val()
if (authorization.includes("secret_token")) {
$('#btn-post').addClass('d-none');
};
timestamp = Date.now();
});
</script>
<style type="text/css">
/* The slider itself */
.slider {
-webkit-appearance: none; /* Override default CSS styles */
appearance: none;
margin-bottom: 8px;
margin-left: 10%;
width: 80%;
height: 5px; /* Specified height */
background: #d3d3d3; /* Grey background */
outline: none; /* Remove outline */
opacity: 0.7; /* Set transparency (for mouse-over effects on hover) */
-webkit-transition: .2s; /* 0.2 seconds transition on hover */
transition: opacity .2s;
}
/* Mouse-over effects */
.slider:hover {
opacity: 1; /* Fully shown on mouse-over */
}
.slider::-webkit-slider-thumb {
-webkit-appearance: none;
appearance: none;
width: 25px;
height: 25px;
border: 0;
background: url('https://raw.githubusercontent.com/nipreps/nireports/main/assets/slider-handle.png');
cursor: pointer;
z-index: 2000 !important;
}
.slider::-moz-range-thumb {
width: 25px;
height: 25px;
border: 0;
background: url('https://raw.githubusercontent.com/nipreps/nireports/main/assets/slider-handle.png');
cursor: pointer;
z-index: 2000 !important;
}
</style>
</head>
<body style="font-family: helvetica;">
<nav class="navbar fixed-top navbar-expand-lg bg-light">
<div class="container-fluid">
<div class="collapse navbar-collapse" id="navbarSupportedContent">
<ul class="navbar-nav me-auto mb-2 mb-lg-0">
<li class="nav-item"><a class="nav-link" href="#Basic visual report">Basic visual report</a></li>
<li class="nav-item dropdown">
<a class="nav-link dropdown-toggle" id="navbarAbout" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#About">
About
</a>
<ul class="dropdown-menu">
<li><a class="dropdown-item" href="#errors">Errors</a></li>
<li><a class="dropdown-item" href="#meta-about-metadata">Reproducibility and provenance information</a></li>
</ul>
</li>
</ul>
</div>
</div>
<div class="d-flex flex-row-reverse">
<div class="form-check form-switch align-self-center flex-fill me-4">
<input class="form-check-input" type="checkbox" id="qcrating-toggler"></input>
<label class="form-check-label" style="width: 100pt;" for="qcrating-toggler">Rating widget</label>
</div>
</div>
</nav>
<noscript>
<h1 class="text-danger"> The navigation menu uses Javascript. Without it this report might not work as expected </h1>
</noscript>
<div id="Basic visual report" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Basic visual report</h1>
<div id="acquisition-headmotion2_datatype-figures_desc-zoomed_subject-185823_suffix-T1w" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Zoomed-in mosaic view of the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-185823/figures/sub-185823_acq-headmotion2_desc-zoomed_T1w.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-185823/figures/sub-185823_acq-headmotion2_desc-zoomed_T1w.svg" target="_blank">sub-185823/figures/sub-185823_acq-headmotion2_desc-zoomed_T1w.svg</a></small>
</div>
<div id="acquisition-headmotion2_datatype-figures_desc-background_subject-185823_suffix-T1w" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">View of the background of the anatomical image</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-185823/figures/sub-185823_acq-headmotion2_desc-background_T1w.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-185823/figures/sub-185823_acq-headmotion2_desc-background_T1w.svg" target="_blank">sub-185823/figures/sub-185823_acq-headmotion2_desc-background_T1w.svg</a></small>
</div>
</div>
<div id="About" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">About</h1>
<div id="errors" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
</div>
<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
reconstructing the provenance of the corresponding derivatives.
</p> <div class="accordion accordion-flush" id="about-metadata">
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-0">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
Provenance Information
</button>
</h2>
<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-0" class="table table-sm table-striped">
<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-185823/anat/sub-185823_acq-headmotion2_T1w.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>23.1.0</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>0.8.1</td></tr>
<tr><td colspan=2>md5sum</td><td>8c26ac843cf3ce4156ef12bbab1a2a7a</td></tr>
<tr><td>warnings</td><td>large_rot_frame</td><td>True</td></tr>
<tr><td>warnings</td><td>small_air_mask</td><td>False</td></tr>
</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-1">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
Dataset Information
</button>
</h2>
<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td>AcquisitionMatrixPE</td><td>256</td></tr>
<tr><td>AcquisitionNumber</td><td>1</td></tr>
<tr><td>AcquisitionTime</td><td>11:22:5.760000</td></tr>
<tr><td>BodyPartExamined</td><td>HEAD</td></tr>
<tr><td>CoilString</td><td>HeadNeck_20</td></tr>
<tr><td>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td>ConversionSoftwareVersion</td><td>v1.0.20211006</td></tr>
<tr><td>Dcm2bidsVersion</td><td>2.1.6</td></tr>
<tr><td>DeviceSerialNumber</td><td>66040</td></tr>
<tr><td>EchoTime</td><td>0.00303</td></tr>
<tr><td>FlipAngle</td><td>9</td></tr>
<tr><td>ImageOrientationPatientDICOM</td><td>[-0.0488082, 0.998452, -0.0266653, 0.0524713, -0.024097, -0.998332]</td></tr>
<tr><td>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'NONE']</td></tr>
<tr><td>ImagingFrequency</td><td>123.21</td></tr>
<tr><td>InPlanePhaseEncodingDirectionDICOM</td><td>ROW</td></tr>
<tr><td>InstitutionAddress</td><td>Magyar Tudosok Korutja 2,Budapest,,HU,1117</td></tr>
<tr><td>InstitutionName</td><td>RCNS</td></tr>
<tr><td>InstitutionalDepartmentName</td><td>BIC</td></tr>
<tr><td>InversionTime</td><td>0.9</td></tr>
<tr><td>MRAcquisitionType</td><td>3D</td></tr>
<tr><td>MTState</td><td>True</td></tr>
<tr><td>MagneticFieldStrength</td><td>3</td></tr>
<tr><td>Manufacturer</td><td>Siemens</td></tr>
<tr><td>ManufacturersModelName</td><td>MAGNETOM Prisma</td></tr>
<tr><td>Modality</td><td>MR</td></tr>
<tr><td>ParallelAcquisitionTechnique</td><td>GRAPPA</td></tr>
<tr><td>ParallelReductionFactorInPlane</td><td>2</td></tr>
<tr><td>PatientPosition</td><td>HFS</td></tr>
<tr><td>PercentPhaseFOV</td><td>100</td></tr>
<tr><td>PercentSampling</td><td>100</td></tr>
<tr><td>PixelBandwidth</td><td>130</td></tr>
<tr><td>ProcedureStepDescription</td><td>head MR-artefacts</td></tr>
<tr><td>ProtocolName</td><td>MPRAGE_move2</td></tr>
<tr><td>ReceiveCoilActiveElements</td><td>HE1-4;NE1,2</td></tr>
<tr><td>ReconMatrixPE</td><td>256</td></tr>
<tr><td>RepetitionTime</td><td>2.3</td></tr>
<tr><td>SequenceVariant</td><td>SK\SP\MP</td></tr>
<tr><td>SeriesDescription</td><td>MPRAGE_move2</td></tr>
<tr><td>SeriesNumber</td><td>7</td></tr>
<tr><td>SliceThickness</td><td>1</td></tr>
<tr><td>SoftwareVersions</td><td>syngo MR XA30</td></tr>
<tr><td>StationName</td><td>AWP66040</td></tr>
</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
</button>
</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>cjv</td><td>0.9317415216086161</td></tr>
<tr><td colspan=3>cnr</td><td>0.9876934232581265</td></tr>
<tr><td colspan=3>efc</td><td>0.614421709048374</td></tr>
<tr><td colspan=3>fber</td><td>2896.0810536545096</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>4.999356666666667</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>4.5624</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>5.1657</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>5.26997</td></tr>
<tr><td>icvs</td><td colspan=2>csf</td><td>0.25798571648530094</td></tr>
<tr><td>icvs</td><td colspan=2>gm</td><td>0.37067491154637494</td></tr>
<tr><td>icvs</td><td colspan=2>wm</td><td>0.37133937196832423</td></tr>
<tr><td>inu</td><td colspan=2>med</td><td>0.8380034863948822</td></tr>
<tr><td>inu</td><td colspan=2>range</td><td>0.479276642203331</td></tr>
<tr><td>qi</td><td colspan=2>1</td><td>0.0</td></tr>
<tr><td>qi</td><td colspan=2>2</td><td>0.003797805874783794</td></tr>
<tr><td>rpve</td><td colspan=2>csf</td><td>7.983504957195691</td></tr>
<tr><td>rpve</td><td colspan=2>gm</td><td>7.828805990978541</td></tr>
<tr><td>rpve</td><td colspan=2>wm</td><td>7.933896762618961</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>192</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>256</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>256</td></tr>
<tr><td>snr</td><td colspan=2>csf</td><td>2.747921998627311</td></tr>
<tr><td>snr</td><td colspan=2>gm</td><td>5.299839690543591</td></tr>
<tr><td>snr</td><td colspan=2>total</td><td>5.635740599186288</td></tr>
<tr><td>snr</td><td colspan=2>wm</td><td>8.859460108387964</td></tr>
<tr><td>snrd</td><td colspan=2>csf</td><td>15.312739951028504</td></tr>
<tr><td>snrd</td><td colspan=2>gm</td><td>22.310265093073827</td></tr>
<tr><td>snrd</td><td colspan=2>total</td><td>21.7135691111729</td></tr>
<tr><td>snrd</td><td colspan=2>wm</td><td>27.517702289416373</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>1.0</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>1.0</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>1.0</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>7.801391219685771</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>0.0</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>12.970850523991926</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>0.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>3326353.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>0.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>58.20361587405205</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>21.70350215653663</td></tr>
<tr><td>summary</td><td>csf</td><td>k</td><td>-0.13640688851975202</td></tr>
<tr><td>summary</td><td>csf</td><td>mad</td><td>117.29503238405253</td></tr>
<tr><td>summary</td><td>csf</td><td>mean</td><td>502.1943779598523</td></tr>
<tr><td>summary</td><td>csf</td><td>median</td><td>507.2838031128049</td></tr>
<tr><td>summary</td><td>csf</td><td>n</td><td>400274.1266831495</td></tr>
<tr><td>summary</td><td>csf</td><td>p05</td><td>194.18963831663132</td></tr>
<tr><td>summary</td><td>csf</td><td>p95</td><td>798.5682605877519</td></tr>
<tr><td>summary</td><td>csf</td><td>stdv</td><td>184.60610224574313</td></tr>
<tr><td>summary</td><td>gm</td><td>k</td><td>0.9651819677468132</td></tr>
<tr><td>summary</td><td>gm</td><td>mad</td><td>84.2194129828256</td></tr>
<tr><td>summary</td><td>gm</td><td>mean</td><td>743.2271726613836</td></tr>
<tr><td>summary</td><td>gm</td><td>median</td><td>739.0993487164378</td></tr>
<tr><td>summary</td><td>gm</td><td>n</td><td>575115.469662184</td></tr>
<tr><td>summary</td><td>gm</td><td>p05</td><td>519.3041150867939</td></tr>
<tr><td>summary</td><td>gm</td><td>p95</td><td>975.077052205801</td></tr>
<tr><td>summary</td><td>gm</td><td>stdv</td><td>139.4568042253941</td></tr>
<tr><td>summary</td><td>wm</td><td>k</td><td>0.4878325121291427</td></tr>
<tr><td>summary</td><td>wm</td><td>mad</td><td>76.51822398791306</td></tr>
<tr><td>summary</td><td>wm</td><td>mean</td><td>910.0940535147424</td></tr>
<tr><td>summary</td><td>wm</td><td>median</td><td>911.6124687641859</td></tr>
<tr><td>summary</td><td>wm</td><td>n</td><td>576146.4039275949</td></tr>
<tr><td>summary</td><td>wm</td><td>p05</td><td>736.4688649326563</td></tr>
<tr><td>summary</td><td>wm</td><td>p95</td><td>1077.6992170363665</td></tr>
<tr><td>summary</td><td>wm</td><td>stdv</td><td>102.89697865127948</td></tr>
<tr><td>tpm</td><td>overlap</td><td>csf</td><td>0.23516841611763573</td></tr>
<tr><td>tpm</td><td>overlap</td><td>gm</td><td>0.5318766214596824</td></tr>
<tr><td>tpm</td><td>overlap</td><td>wm</td><td>0.5513837063361396</td></tr>
<tr><td colspan=3>wm2max</td><td>0.49324397362447303</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%;">
<div class="card-header m-0">
Rating widget
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
</div>
<div class="card-body">
<div class="accordion">
<div class="accordion-item">
<h2 class="accordion-header" id="qcslider-head">
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
</h2>
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
<div class="accordion-body">
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
</ul>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="qcartifacts-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
Record specific artifacts
</button>
</h2>
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
<div class="accordion-body">
<fieldset id="qcartifacts-group" class="form-group">
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://localhost:8000/");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>