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Which driver are you using and version of it (Ex: PostgreSQL 10.0):
MariaDB 10.4
Which TablePlus build number are you using (the number on the welcome screen, Ex: build 81):
Build 128
The steps to reproduce this issue:
Connect to server
Select database
Select 1 table and press Ctrl + A to select all tables.
Scroll down and you will see that the rest of the tables are not selected
There is a workaround.
If you scroll down, hold the ctrl key while selecting the first 'not-selected' table and press
CTRL + A again to select more tables.