diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index d4c69ea7..b0e45a69 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -168369,7 +168369,6 @@ - MAM02450e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000059804" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -169110,7 +169109,6 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000117834" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -169418,7 +169416,6 @@ - MAM02578e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000066230 or ENSG00000090020 or ENSG00000115616" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -169620,7 +169617,7 @@ - MAM02938e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000113396 or ENSG00000130304 or ENSG00000143554 or ENSG00000167114" + - gene_reaction_rule: "ENSG00000130304 or ENSG00000143554 or ENSG00000167114" - rxnFrom: "HMRdatabase" - eccodes: "6.2.1.-" - subsystem: @@ -169969,7 +169966,7 @@ - MAM02519e: -2 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000196517 or ENSG00000268104" + - gene_reaction_rule: "ENSG00000268104" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -169985,7 +169982,7 @@ - MAM02519e: -2 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000196517 or ENSG00000268104" + - gene_reaction_rule: "ENSG00000268104" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -170001,7 +169998,7 @@ - MAM02519e: -2 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000196517 or ENSG00000268104" + - gene_reaction_rule: "ENSG00000268104" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -170017,7 +170014,7 @@ - MAM02519e: -2 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000196517 or ENSG00000268104" + - gene_reaction_rule: "ENSG00000268104" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -170033,7 +170030,7 @@ - MAM02519e: -2 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000196517 or ENSG00000268104" + - gene_reaction_rule: "ENSG00000268104" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -170081,7 +170078,7 @@ - MAM03135e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000196517 or ENSG00000268104" + - gene_reaction_rule: "ENSG00000268104" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -170097,7 +170094,7 @@ - MAM02519e: -2 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000196517 or ENSG00000268104" + - gene_reaction_rule: "ENSG00000268104" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -170113,7 +170110,7 @@ - MAM02896e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000196517 or ENSG00000268104" + - gene_reaction_rule: "ENSG00000268104" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -170129,7 +170126,7 @@ - MAM02519e: -2 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000131389 or ENSG00000196517 or ENSG00000268104" + - gene_reaction_rule: "ENSG00000131389 or ENSG00000268104" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -172611,7 +172608,7 @@ - MAM01252m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000152779 or ENSG00000165449 or ENSG00000174327" + - gene_reaction_rule: "ENSG00000152779 or ENSG00000174327" - rxnFrom: "HMRdatabase" - references: "PMID:11004451;PMID:911815" - subsystem: @@ -172802,7 +172799,6 @@ - MAM02183m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100075" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -172921,7 +172917,6 @@ - MAM02661m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100075" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173426,7 +173421,6 @@ - MAM01637m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173441,7 +173435,6 @@ - MAM01680m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173456,7 +173449,6 @@ - MAM01754m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173486,7 +173478,6 @@ - MAM01680m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173501,7 +173492,6 @@ - MAM01754m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173530,7 +173520,6 @@ - MAM01688m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173545,7 +173534,6 @@ - MAM01756m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173560,7 +173548,6 @@ - MAM01642m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173575,7 +173562,6 @@ - MAM01688m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173590,7 +173576,6 @@ - MAM01756m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:14598172" - subsystem: @@ -173901,7 +173886,6 @@ - MAM01643m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -173942,7 +173926,6 @@ - MAM01754m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -173956,7 +173939,6 @@ - MAM01754m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -173970,7 +173952,6 @@ - MAM01754m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174012,7 +173993,6 @@ - MAM01747m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174040,7 +174020,6 @@ - MAM01747m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174054,7 +174033,6 @@ - MAM01680m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174082,7 +174060,6 @@ - MAM01643m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174109,7 +174086,6 @@ - MAM01756m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174123,7 +174099,6 @@ - MAM01756m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174137,7 +174112,6 @@ - MAM01643m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174164,7 +174138,6 @@ - MAM01756m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174178,7 +174151,6 @@ - MAM01753m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174192,7 +174164,6 @@ - MAM01753m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions"