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CHANGELOG.md

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WikiGenomesBase Changelog

ChlamBase Beta v1.5

(Developer Website https://dev.chlambase.org)

Upcoming Changes

  • Updated JBrowse -- Setup scripts now properly download and instantiate the JBrowse instance with annotated gene, mutant, and operon canvases --- C. muridarum st. Nigg genome now fixed and also shows both the main chromosome and plasmid -- Fixed Celery --- JBrowse will now update the tracks to display updated mutant and operon information when a new annotation is submitted
  • New Gene Page Header -- Moved cell visualizer to header
  • New Gene Page Dashboard -- Every module has a checkbox whether or not it is expanded below
  • Protein DataBank View -- Added new view to Gene Product Module --- Shows complete list of annotated PDB IDs --- Shows 3 images of the PDB ID structre taken from ebi --- Shows the references to the pubmed paper cited in the annotation
  • Changes to Ortholog Alignment Module -- Fixed issue with msa viewer header not working (major version didn't work, switched to dev) -- Added default showing of consensus graph -- Ability to change color schemes -- Changed labels to use locus tags and ref seq ids respectively -- Stylized the buttons
  • Changes to Expression Module -- Added a new section: Developmental Body Enrichment --- Allows users to annotate the developing bodies in which the proteins are enriched
  • Refactor of GO module into two modules -- Functions Module (Molecular Function, Biological Process) -- Localizations Module (Cellular Component)
  • Operon Module -- Fixed reading and writing issues to WikiData -- Now works properly!
  • Mutants Module -- Added Intron Mutagenesis -- Added Recombination
  • Host Pathogen Module -> Protein Interactions -- Split HP Module into two sections: Host Protein Interactions and Bacterial Interactions --- Bacterial Protein interactions (intraspecies interactions) will be shown below HP
  • Footer -- Added improved style -- Added FAQ -- Refactored the Footer into its own module to allow greater flexibility
  • Landing Page -- Moved search bar up -- Turned the search bar into an advanced search bar
  • Lots of refactoring and code improvements

Chlambase Official v1.0

(Production Website https://chlambase.org)