Merge pull request #319 from che85/add_automatic_preop_segmentation

BUG: temporarily commenting out code that crashes Slicer (issue #318)

Author: che85

SliceTracker/SliceTrackerUtils/steps/segmentation.py

@@ -266,22 +266,22 @@ def onNewImageSeriesReceived(self, caller, event, callData):
   @vtk.calldata_type(vtk.VTK_OBJECT)
   def _onAutomaticSegmentationFinished(self, caller, event, labelNode):
     self.manualSegmentationPlugin.enabled = True
-    surfaceCutToLabelWidget = self.manualSegmentationPlugin.surfaceCutToLabelWidget
-
-    segmentationsLogic = slicer.modules.segmentations.logic()
-
-    segmentationNode = surfaceCutToLabelWidget.segmentationNode
-    map(lambda x: segmentationNode.RemoveSegment(x), surfaceCutToLabelWidget.getSegmentIDs())
-    segmentationsLogic.ImportLabelmapToSegmentationNode(labelNode, segmentationNode)
-    surfaceCutToLabelWidget.configureSegmentVisibility()
-
-    segmentIDs = surfaceCutToLabelWidget.getSegmentIDs()
-    segmentationNode.GetSegmentation().GetSegment(segmentIDs[0]).SetName(surfaceCutToLabelWidget.SEGMENTATION_NAME)
-
-    surfaceCutToLabelWidget.imageVolume = self.session.currentSeriesVolume
-    surfaceCutToLabelWidget.labelVolume = labelNode
-
-    surfaceCutToLabelWidget.segmentEditorWidgetButton.enabled = True
+    # surfaceCutToLabelWidget = self.manualSegmentationPlugin.surfaceCutToLabelWidget
+    #
+    # segmentationsLogic = slicer.modules.segmentations.logic()
+    #
+    # segmentationNode = surfaceCutToLabelWidget.segmentationNode
+    # map(lambda x: segmentationNode.RemoveSegment(x), surfaceCutToLabelWidget.getSegmentIDs())
+    # segmentationsLogic.ImportLabelmapToSegmentationNode(labelNode, segmentationNode)
+    # surfaceCutToLabelWidget.configureSegmentVisibility()
+    #
+    # segmentIDs = surfaceCutToLabelWidget.getSegmentIDs()
+    # segmentationNode.GetSegmentation().GetSegment(segmentIDs[0]).SetName(surfaceCutToLabelWidget.SEGMENTATION_NAME)
+    #
+    # surfaceCutToLabelWidget.imageVolume = self.session.currentSeriesVolume
+    # surfaceCutToLabelWidget.labelVolume = labelNode
+    #
+    # surfaceCutToLabelWidget.segmentEditorWidgetButton.enabled = True
     self._onSegmentationFinished(caller, event, labelNode)
 
   @vtk.calldata_type(vtk.VTK_OBJECT)