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dependencies.txt
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R version 4.2.1 (2022-06-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
locale:
[1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8
[5] LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8
[7] LC_PAPER=en_AU.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] grid parallel stats4 stats graphics grDevices utils
[8] datasets methods base
other attached packages:
[1] shinycssloaders_1.0.0 svglite_2.1.0
[3] rjson_0.2.21 httr_1.4.4
[5] ggrepel_0.9.1 DT_0.25
[7] limma_3.52.4 ComplexHeatmap_2.12.1
[9] shinyalert_3.0.0 shinyjs_2.1.0
[11] shinydashboard_0.7.2 testthat_3.1.5
[13] DEP_1.18.0 forcats_0.5.2
[15] stringr_1.4.1 dplyr_1.0.10
[17] purrr_0.3.5 readr_2.1.3
[19] tidyr_1.2.1 tibble_3.1.8
[21] ggplot2_3.3.6 tidyverse_1.3.2
[23] shiny_1.7.2 SummarizedExperiment_1.26.1
[25] Biobase_2.56.0 GenomicRanges_1.48.0
[27] GenomeInfoDb_1.32.4 IRanges_2.30.1
[29] S4Vectors_0.34.0 BiocGenerics_0.42.0
[31] MatrixGenerics_1.8.1 matrixStats_0.62.0
loaded via a namespace (and not attached):
[1] uuid_1.1-0 readxl_1.4.1
[3] backports_1.4.1 circlize_0.4.15
[5] systemfonts_1.0.4 plyr_1.8.7
[7] gmm_1.7 crosstalk_1.2.0
[9] BiocParallel_1.30.4 digest_0.6.30
[11] foreach_1.5.2 htmltools_0.5.3
[13] magick_2.7.3 fansi_1.0.3
[15] memoise_2.0.1 magrittr_2.0.3
[17] googlesheets4_1.0.1 cluster_2.1.4
[19] doParallel_1.0.17 tzdb_0.3.0
[21] modelr_0.1.9 imputeLCMD_2.1
[23] sandwich_3.0-2 colorspace_2.0-3
[25] rvest_1.0.3 haven_2.5.1
[27] xfun_0.34 crayon_1.5.2
[29] RCurl_1.98-1.9 jsonlite_1.8.2
[31] impute_1.70.0 zoo_1.8-11
[33] iterators_1.0.14 glue_1.6.2
[35] gtable_0.3.1 gargle_1.2.1
[37] zlibbioc_1.42.0 XVector_0.36.0
[39] GetoptLong_1.0.5 DelayedArray_0.22.0
[41] shape_1.4.6 scales_1.2.1
[43] vsn_3.64.0 mvtnorm_1.1-3
[45] DBI_1.1.3 Rcpp_1.0.9
[47] mzR_2.30.0 xtable_1.8-4
[49] clue_0.3-62 preprocessCore_1.58.0
[51] MsCoreUtils_1.8.0 htmlwidgets_1.5.4
[53] RColorBrewer_1.1-3 ellipsis_0.3.2
[55] farver_2.1.1 pkgconfig_2.0.3
[57] XML_3.99-0.11 sass_0.4.2
[59] dbplyr_2.2.1 utf8_1.2.2
[61] labeling_0.4.2 tidyselect_1.2.0
[63] rlang_1.0.6 later_1.3.0
[65] munsell_0.5.0 cellranger_1.1.0
[67] tools_4.2.1 cachem_1.0.6
[69] cli_3.4.1 generics_0.1.3
[71] broom_1.0.1 fdrtool_1.2.17
[73] evaluate_0.17 fastmap_1.1.0
[75] mzID_1.34.0 yaml_2.3.6
[77] knitr_1.40 fs_1.5.2
[79] ncdf4_1.19 mime_0.12
[81] xml2_1.3.3 brio_1.1.3
[83] compiler_4.2.1 rstudioapi_0.14
[85] png_0.1-7 affyio_1.66.0
[87] reprex_2.0.2 bslib_0.4.0
[89] stringi_1.7.8 highr_0.9
[91] MSnbase_2.22.0 lattice_0.20-45
[93] ProtGenerics_1.28.0 Matrix_1.5-1
[95] tmvtnorm_1.5 vctrs_0.4.2
[97] pillar_1.8.1 norm_1.0-10.0
[99] lifecycle_1.0.3 BiocManager_1.30.18
[101] jquerylib_0.1.4 MALDIquant_1.21
[103] GlobalOptions_0.1.2 bitops_1.0-7
[105] httpuv_1.6.6 R6_2.5.1
[107] pcaMethods_1.88.0 affy_1.74.0
[109] renv_0.16.0 promises_1.2.0.1
[111] codetools_0.2-18 MASS_7.3-58.1
[113] assertthat_0.2.1 fontawesome_0.3.0
[115] withr_2.5.0 GenomeInfoDbData_1.2.8
[117] parallel_4.2.1 hms_1.1.2
[119] rmarkdown_2.17 googledrive_2.0.0
[121] Cairo_1.6-0 lubridate_1.8.0
[123] tinytex_0.42