Skip to content

Commit eea2229

Browse files
luciansmithluciansmith
committed
Update to l1v5.
There seem to be a lot of duplicate files; not sure if they're still necessary?
1 parent 6dc7ace commit eea2229

File tree

8 files changed

+41
-23
lines changed

8 files changed

+41
-23
lines changed

‎documents/sed-ml-L1V5.pdf

3.44 MB
Binary file not shown.

‎index.html

+3-4
Original file line numberDiff line numberDiff line change
@@ -141,15 +141,14 @@ <h1 class="page-header"><i class="fa fa-fw fa-home"></i> What is SED-ML?</h1>
141141
reproducibility of simulation experiments.
142142
</p>
143143
<p>
144-
The current version is <a href="documents/sed-ml-L1V4.pdf" target="_blank"><b>SED-ML Level 1 Version
145-
4</b></a>.
144+
The current version is <a href="documents/sed-ml-L1V5.pdf" target="_blank"><b>SED-ML Level 1 Version 5</b></a>.
146145
For additional specification documents and proposals see the <a href="specifications.html" title="Specifications">Specifications</a>
147146
page.
148147
</p>
149-
<a href="documents/sed-ml-L1V4.pdf" target="_blank">
148+
<a href="documents/sed-ml-L1V5.pdf" target="_blank">
150149
<span class="btn btn-default" style="font-weight: bold;">
151150
<img alt="logo" src="images/logoSEDML_w90_t.png"/>
152-
L1V4 (official specification document)
151+
L1V5 (official specification document)
153152
<img alt="pdf" src="images/pdf.png"/>
154153
</span>
155154
</a>

‎showcase.html

+3
Original file line numberDiff line numberDiff line change
@@ -373,6 +373,7 @@ <h2>SED-ML libraries</h2>
373373
<li>L1V2</li>
374374
<li>L1V3</li>
375375
<li>L1V4</li>
376+
<li>L1V5</li>
376377
</ul>
377378
</td>
378379
<td>C++ library for reading and writing SED-ML. Swig languange bindings for C#, Java, Python, R and Ruby.</td>
@@ -486,6 +487,7 @@ <h2>SED-ML tools</h2>
486487
<li>L1V2</li>
487488
<li>L1V3</li>
488489
<li>L1V4</li>
490+
<li>L1V5</li>
489491
</ul>
490492
</td>
491493
<td>Software application for simulation and analysis of biochemical networks and their dynamics. COPASI is a stand-alone program that supports models in the SBML standard and can simulate their behavior using ODEs or Gillespie`s stochastic simulation algorithm; arbitrary discrete events can be included in such simulations. COPASI supports impor and export of SED-ML files.</td>
@@ -717,6 +719,7 @@ <h2>SED-ML tools</h2>
717719
<li>L1V2</li>
718720
<li>L1V3</li>
719721
<li>L1V4</li>
722+
<li>L1V5</li>
720723
</ul>
721724
</td>
722725
<td>Python environment based on spyder2 IDE. It combines a number of existing libraries, including libSBML, libRoadRunner (including libStruct), libAntimony, and is extensible via telPlugins.</td>

‎site_creator/templates/db/libraries.yaml

+1
Original file line numberDiff line numberDiff line change
@@ -46,6 +46,7 @@ libraries:
4646
- L1V2
4747
- L1V3
4848
- L1V4
49+
- L1V5
4950

5051
- name: 'libSedML (old version)'
5152
link: 'http://libsedml.sf.net'

‎site_creator/templates/db/tools.yaml

+1
Original file line numberDiff line numberDiff line change
@@ -91,6 +91,7 @@ tools:
9191
- L1V2
9292
- L1V3
9393
- L1V4
94+
- L1V5
9495
modelLanguages:
9596
- SBML
9697

‎site_creator/templates/index.html

+4-6
Original file line numberDiff line numberDiff line change
@@ -14,15 +14,13 @@ <h1 class="page-header"><i class="fa fa-fw fa-home"></i> What is SED-ML?</h1>
1414
reproducibility of simulation experiments.
1515
</p>
1616
<p>
17-
The current version is <a href="documents/sed-ml-L1V4.pdf" target="_blank"><b>SED-ML Level 1 Version
18-
4</b></a>.
19-
For additional specification documents and proposals see the <a href="specifications.html" title="Specifications">Specifications</a>
20-
page.
17+
The current version is <a href="documents/sed-ml-L1V5.pdf" target="_blank"><b>SED-ML Level 1 Version 5</b></a>.
18+
For additional specification documents and proposals see the <a href="specifications.html" title="Specifications">Specifications</a> page.
2119
</p>
22-
<a href="documents/sed-ml-L1V4.pdf" target="_blank">
20+
<a href="documents/sed-ml-L1V5.pdf" target="_blank">
2321
<span class="btn btn-default" style="font-weight: bold;">
2422
<img alt="logo" src="images/logoSEDML_w90_t.png"/>
25-
L1V4 (official specification document)
23+
L1V5 (official specification document)
2624
<img alt="pdf" src="images/pdf.png"/>
2725
</span>
2826
</a>

‎site_creator/templates/specifications.html

+14-6
Original file line numberDiff line numberDiff line change
@@ -16,10 +16,10 @@ <h1 class="page-header"><i class="fa fa-fw fa-file-code-o"></i> SED-ML Specifica
1616
<tr>
1717
<td><b>Latest release:</b></td>
1818
<td>
19-
<a href="documents/sed-ml-L1V4.pdf" target="_blank">
19+
<a href="documents/sed-ml-L1V5.pdf" target="_blank">
2020
<span class="btn btn-success" style="font-weight: bold;">
2121
<img alt="logo" src="images/logoSEDML_w90_t.png" height="25"/>
22-
L1V4
22+
L1V5
2323
<img alt="pdf" src="images/pdf.png" height="35"/>
2424
</span>
2525
</a>
@@ -33,10 +33,10 @@ <h1 class="page-header"><i class="fa fa-fw fa-file-code-o"></i> SED-ML Specifica
3333
</td>
3434
<!--
3535
<td>
36-
<a href="https://github.com/SED-ML/sed-ml/raw/master/specification/level-1-version-4/sed-ml-L1V4.pdf" target="_blank">
36+
<a href="https://github.com/SED-ML/sed-ml/raw/master/specification/level-1-version-4/sed-ml-L1V5.pdf" target="_blank">
3737
<span class="btn btn-warning" style="font-weight: bold;">
3838
<img alt="logo" src="images/logoSEDML_w90_t.png" height="25"/>
39-
L1V4 draft
39+
L1V5 draft
4040
<img alt="pdf" src="images/pdf.png" height="35"/>
4141
</span>
4242
</a>
@@ -124,14 +124,22 @@ <h3>Proposals</h3>
124124

125125
<h2>All specifications</h2>
126126
<p>
127-
<a href="documents/sed-ml-L1V4.pdf" target="_blank">
127+
<a href="documents/sed-ml-L1V5.pdf" target="_blank">
128128
<span class="btn btn-default" style="font-weight: bold;">
129-
L1V4 (official specification document)
129+
L1V5 (official specification document)
130130
<img alt="pdf" src="images/pdf.png" height="35"/>
131131
</span>
132132
</a>
133133
</p>
134134
<p>
135+
<a href="documents/sed-ml-L1V4.pdf" target="_blank">
136+
<span class="btn btn-default" style="font-weight: bold;">
137+
L1V4 (official specification document)
138+
<img alt="pdf" src="images/pdf.png" height="35"/>
139+
</span>
140+
</a>
141+
</p>
142+
<p>
135143
<a href="documents/sed-ml-L1V3.pdf" target="_blank">
136144
<span class="btn btn-default" style="font-weight: bold;">
137145
L1V3 (official specification document)

‎specifications.html

+15-7
Original file line numberDiff line numberDiff line change
@@ -143,10 +143,10 @@ <h1 class="page-header"><i class="fa fa-fw fa-file-code-o"></i> SED-ML Specifica
143143
<tr>
144144
<td><b>Latest release:</b></td>
145145
<td>
146-
<a href="documents/sed-ml-L1V4.pdf" target="_blank">
146+
<a href="documents/sed-ml-L1V5.pdf" target="_blank">
147147
<span class="btn btn-success" style="font-weight: bold;">
148148
<img alt="logo" src="images/logoSEDML_w90_t.png" height="25"/>
149-
L1V4
149+
L1V5
150150
<img alt="pdf" src="images/pdf.png" height="35"/>
151151
</span>
152152
</a>
@@ -160,16 +160,16 @@ <h1 class="page-header"><i class="fa fa-fw fa-file-code-o"></i> SED-ML Specifica
160160
</td>
161161
<!--
162162
<td>
163-
<a href="https://github.com/SED-ML/sed-ml/raw/master/specification/level-1-version-4/sed-ml-L1V4.pdf" target="_blank">
163+
<a href="https://github.com/SED-ML/sed-ml/raw/master/specification/level-1-version-5/sed-ml-L1V5.pdf" target="_blank">
164164
<span class="btn btn-warning" style="font-weight: bold;">
165165
<img alt="logo" src="images/logoSEDML_w90_t.png" height="25"/>
166-
L1V4 draft
166+
L15 draft
167167
<img alt="pdf" src="images/pdf.png" height="35"/>
168168
</span>
169169
</a>
170170
</td>
171171
-->
172-
<td>The source is available from <a href="https://github.com/SED-ML/sed-ml/tree/master/specification/level-1-version-4">https://github.com/SED-ML/sed-ml/tree/master/specification/level-1-version-4</a>.<br />
172+
<td>The source is available from <a href="https://github.com/SED-ML/sed-ml/tree/master/specification/level-1-version-5">https://github.com/SED-ML/sed-ml/tree/master/specification/level-1-version-5</a>.<br />
173173
Please submit changes via pull requests against the repository.<br />
174174
If you find issues with the specification please report them at <a href="https://github.com/SED-ML/sed-ml/issues">https://github.com/SED-ML/sed-ml/issues</a>.
175175
</td>
@@ -251,14 +251,22 @@ <h3>Proposals</h3>
251251

252252
<h2>All specifications</h2>
253253
<p>
254-
<a href="documents/sed-ml-L1V4.pdf" target="_blank">
254+
<a href="documents/sed-ml-L1V5.pdf" target="_blank">
255255
<span class="btn btn-default" style="font-weight: bold;">
256-
L1V4 (official specification document)
256+
L1V5 (official specification document)
257257
<img alt="pdf" src="images/pdf.png" height="35"/>
258258
</span>
259259
</a>
260260
</p>
261261
<p>
262+
<a href="documents/sed-ml-L1V4.pdf" target="_blank">
263+
<span class="btn btn-default" style="font-weight: bold;">
264+
L1V4 (official specification document)
265+
<img alt="pdf" src="images/pdf.png" height="35"/>
266+
</span>
267+
</a>
268+
</p>
269+
<p>
262270
<a href="documents/sed-ml-L1V3.pdf" target="_blank">
263271
<span class="btn btn-default" style="font-weight: bold;">
264272
L1V3 (official specification document)

0 commit comments

Comments
 (0)