diff --git a/annotation/vep_annotation.py b/annotation/vep_annotation.py index 37a32996f..20e6e2ab5 100644 --- a/annotation/vep_annotation.py +++ b/annotation/vep_annotation.py @@ -101,6 +101,7 @@ def _get_custom_params_list(cvf_list: list[ColumnVEPField], prefix, data_path) - params["short_name"] = cvf.source_field if extension == 'bed': + params["num_records"] = "10000" # repeat masker can get ridiculous - truncates with "..." fmt = "bed" elif extension == 'bw': fmt = "bigwig"