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Update README, ReleaseNotes, and bump version number
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README.md

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@@ -36,5 +36,9 @@ See [doc/ReleaseNotes.txt](doc/ReleaseNotes.txt) for release history details.
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## Support
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While some email support will be available which we will do our best to fulfill, if you have support or service requirements, talk to us about our support offerings which include guaranteed response times, training, project advice, priority bug fixes and feature requests.
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Some email support will be available via [email protected] which we will do our best to fulfill. If you have specific support or service requirements, talk to us about our support offerings which include guaranteed response times, training, project advice, priority bug fixes and feature requests.
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An [rtg-users](https://groups.google.com/a/realtimegenomics.com/forum/#!forum/rtg-users) discussion group is now available for general questions, tips, and other discusssions.
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To be informed of new software releases, subscribe to the low-traffic [rtg-announce](https://groups.google.com/a/realtimegenomics.com/forum/#!forum/rtg-announce) group.
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doc/ReleaseNotes.txt

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is built. Not all features described below may be included in this
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product.
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RTG Core 3.4.1 (2015-01-22)
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---------------------------
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This is primarily a bugfix release:
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* snp/family/population: Fixed a crash that could occur when calling
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across blocks of Ns when the only hypothesis presented by the reads
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was a deletion of sufficient length.
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* snp/family/population: When calling across blocks of Ns, under some
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circumstances no variant call would be made.
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* snp/family/population: Extremely large GQ and DNP FORMAT values are
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now capped at the maximum permitted by BCF (2147483647). Previously,
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values above this could occasionally trigger a crash.
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* wrapper: Changes to streamline the first run configuration and to
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bring Unix and Windows wrappers closer to equivalence, including
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clearer instructions of how to customize initial
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configuration. Crash reporting is now opt-out rather than opt-in.
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* unix wrapper: When the operating system fails to allocate memory to
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the JVM (typically due to other memory-intensive processes running
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on the same machine) this is now presented as a user message, rather
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than triggering a crash report talkback.
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* many: input list files are now validated during loading rather than
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after loading the list. This gives much better error handling in the
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case where a user accidentally gives the name of an alignment file
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as an input list file.
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* Other improvements and cleanups to documentation.
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Previous releases:
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RTG Core 3.4 (2014-12-20)
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-------------------------
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* aview: The flag --dont-display-dots has been renamed to
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--no-dots for consistency.
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Previous releases:
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RTG Core 3.3.2 (2014-04-09)
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---------------------------
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#
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VERSION = 3.4
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VERSION = 3.4.1

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