|
| 1 | +# To be filled by the author(s) at the time of submission |
| 2 | +# ------------------------------------------------------- |
| 3 | + |
| 4 | +# Title of the article: |
| 5 | +# - For a successful replication, it shoudl be prefixed with "[Re]" |
| 6 | +# - For a failed replication, it should be prefixed with "[¬Re]" |
| 7 | +# - For other article types, no instruction (but please, not too long) |
| 8 | +title: "[Re] Hippocampal Phase-Amplitude Coupling unearthed again" |
| 9 | + |
| 10 | +# List of authors with name, orcid number, email and affiliation |
| 11 | +# Affiliation "*" means contact author (required even for single-authored papers) |
| 12 | +authors: |
| 13 | + |
| 14 | + - name: Harald Hentschke |
| 15 | + orcid: 0000-0003-0930-1603 |
| 16 | + |
| 17 | + affiliations: 1,* # * is for contact author |
| 18 | + |
| 19 | +# List of affiliations with code (corresponding to author affiliations), name |
| 20 | +# and address. You can also use these affiliations to add text such as "Equal |
| 21 | +# contributions" as name (with no address). |
| 22 | +affiliations: |
| 23 | + - code: 1 |
| 24 | + name: Freelancing Data Scientist |
| 25 | + address: Berlin, Germany |
| 26 | + |
| 27 | +# List of keywords (adding the programming language might be a good idea) |
| 28 | +keywords: rescience c, Matlab, hippocampus, cross-frequency coupling, phase-amplitude coupling, theta oscillations, gamma oscillations, cholinergic system, atropine |
| 29 | + |
| 30 | +# Code URL and DOI/SWH (url is mandatory for replication, doi after acceptance) |
| 31 | +# You can get a DOI for your code from Zenodo, or an SWH identifier from |
| 32 | +# Software Heritage. |
| 33 | +# see https://guides.github.com/activities/citable-code/ |
| 34 | +code: |
| 35 | + - url: https://github.com/hhentschke/ReScience_10yrReproChallenge/tree/v.1.0.0 |
| 36 | + - doi: 10.5281/zenodo.4021389 |
| 37 | + - swh: |
| 38 | + |
| 39 | +# Data URL and DOI (optional if no data) |
| 40 | +data: |
| 41 | + - url: |
| 42 | + - doi: |
| 43 | + |
| 44 | +# Information about the original article that has been replicated |
| 45 | +replication: |
| 46 | + - cite: Hentschke, H., Perkins, M.G., Pearce, R.A., & Banks, M.I. (2007) Muscarinic blockade weakens interaction of gamma with theta rhythms in mouse hippocampus. Eur.J.Neurosci., 26, 1642–1656. |
| 47 | + - bib: # Bibtex key (if any) in your bibliography file |
| 48 | + - url: https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1460-9568.2007.05779.x |
| 49 | + - doi: 10.1111/j.1460-9568.2007.05779.x |
| 50 | + |
| 51 | +# Don't forget to surround abstract with double quotes |
| 52 | +abstract: "This is the description of a partly successful replication of a study of electrophysiological brain signals |
| 53 | +implemented 15 years ago in Matlab, motivated by ReScience's Ten Years Reproducibility Challenge. In the original study, the phenomenon of phase-amplitude coupling (PAC) was investigated in the hippocampus, a brain structure pivotal for navigation and the formation of memory." |
| 54 | + |
| 55 | +# Bibliography file (yours) |
| 56 | +bibliography: bibliography.bib |
| 57 | + |
| 58 | +# Type of the article |
| 59 | +# Type can be: |
| 60 | +# * Editorial |
| 61 | +# * Letter |
| 62 | +# * Replication |
| 63 | +type: Replication |
| 64 | + |
| 65 | +# Scientific domain of the article (e.g. Computational Neuroscience) |
| 66 | +# (one domain only & try to be not overly specific) |
| 67 | +domain: Neuroscience |
| 68 | + |
| 69 | +# Coding language (main one only if several) |
| 70 | +language: Matlab |
| 71 | + |
| 72 | + |
| 73 | +# To be filled by the author(s) after acceptance |
| 74 | +# ----------------------------------------------------------------------------- |
| 75 | + |
| 76 | +# For example, the URL of the GitHub issue where review actually occured |
| 77 | +review: |
| 78 | + - url: https://github.com/ReScience/submissions/issues/30 |
| 79 | + |
| 80 | +contributors: |
| 81 | + - name: Olivia Guest |
| 82 | + orcid: 0000-0002-1891-0972 |
| 83 | + role: editor |
| 84 | + - name: Tom Donoghue |
| 85 | + orcid: 0000-0001-5911-0472 |
| 86 | + role: reviewer |
| 87 | + - name: |
| 88 | + orcid: |
| 89 | + role: reviewer |
| 90 | + |
| 91 | +# This information will be provided by the editor |
| 92 | +dates: |
| 93 | + - received: April 21, 2020 |
| 94 | + - accepted: September 9, 2020 |
| 95 | + - published: September 10, 2020 |
| 96 | + |
| 97 | +# This information will be provided by the editor |
| 98 | +article: |
| 99 | + - number: 3 # Article number will be automatically assigned during publication |
| 100 | + - doi: 10.5281/zenodo.4022361 # DOI from Zenodo |
| 101 | + - url: https://zenodo.org/record/4022361/files/article.pdf # Final PDF URL (Zenodo or rescience website?) |
| 102 | + |
| 103 | +# This information will be provided by the editor |
| 104 | +journal: |
| 105 | + - name: "ReScience C" |
| 106 | + - issn: 2430-3658 |
| 107 | + - volume: 6 |
| 108 | + - issue: 3 |
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