|
| 1 | +# To be filled by the author(s) at the time of submission |
| 2 | +# ------------------------------------------------------- |
| 3 | + |
| 4 | +# Title of the article: |
| 5 | +# - For a successful replication, it should be prefixed with "[Re]" |
| 6 | +# - For a failed replication, it should be prefixed with "[¬Re]" |
| 7 | +# - For other article types, no instruction (but please, not too long) |
| 8 | +title: "[Re] Spread of alpha-synuclein pathology through the brain connectome is modulated by selective vulnerability and predicted by network analysis" |
| 9 | + |
| 10 | +# List of authors with name, orcid number, email and affiliation |
| 11 | +# Affiliation "*" means contact author (required even for single-authored papers) |
| 12 | +authors: |
| 13 | + - name: Thomas E. Paul |
| 14 | + orcid: 0000-0003-2311-357X |
| 15 | + |
| 16 | + affiliations: 1,2 |
| 17 | + |
| 18 | + - name: Mathieu Bourdenx |
| 19 | + orcid: 0000-0002-9799-9222 |
| 20 | + |
| 21 | + affiliations: 1,2,* # * is for contact author |
| 22 | + |
| 23 | +# List of affiliations with code (corresponding to author affiliations), name |
| 24 | +# and address. You can also use these affiliations to add text such as "Equal |
| 25 | +# contributions" as name (with no address). |
| 26 | +affiliations: |
| 27 | + - code: 1 |
| 28 | + name: Univ. de Bordeaux, Institut des Maladies Neurodégénératives, UMR 5293 |
| 29 | + address: Bordeaux, France |
| 30 | + |
| 31 | + - code: 2 |
| 32 | + name: CNRS, Institut des Maladies Neurodégénératives, UMR 5293 |
| 33 | + address: Bordeaux, France |
| 34 | + |
| 35 | + |
| 36 | +# List of keywords (adding the programming language might be a good idea) |
| 37 | +keywords: Neuroscience, Alpha-synuclein, Propagation, Python |
| 38 | + |
| 39 | +# Code URL and DOI/SWH (url is mandatory for replication, doi after acceptance) |
| 40 | +# You can get a DOI for your code from Zenodo, or an SWH identifier from |
| 41 | +# Software Heritage. |
| 42 | +# see https://guides.github.com/activities/citable-code/ |
| 43 | +code: |
| 44 | + - url: https://github.com/MathieuBo/PathoSpreading |
| 45 | + - doi: |
| 46 | + - swh: swh:1:dir:e3e3e44ddaaea239c4016f57f0b0af98e91d0d4f |
| 47 | + |
| 48 | +# Data URL and DOI (optional if no data) |
| 49 | +data: |
| 50 | + - url: https://github.com/MathieuBo/PathoSpreading |
| 51 | + - doi: |
| 52 | + |
| 53 | +# Information about the original article that has been replicated |
| 54 | +replication: |
| 55 | + - cite: Henderson, M.X., Cornblath, E.J., Darwich, A. et al. Spread of α-synuclein pathology through the brain connectome is modulated by selective vulnerability and predicted by network analysis. Nat Neurosci 22, 1248–1257 (2019). https://doi.org/10.1038/s41593-019-0457-5 |
| 56 | + - bib: Henderson_2019 |
| 57 | + - url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6662627/ |
| 58 | + - doi: 10.1038/s41593-019-0457-5 |
| 59 | + |
| 60 | +# Don't forget to surround abstract with double quotes |
| 61 | +abstract: "" |
| 62 | + |
| 63 | +# Bibliography file (yours) |
| 64 | +bibliography: bibliography.bib |
| 65 | + |
| 66 | +# Type of the article |
| 67 | +# Type can be: |
| 68 | +# * Editorial |
| 69 | +# * Letter |
| 70 | +# * Replication |
| 71 | +type: Replication |
| 72 | + |
| 73 | +# Scientific domain of the article (e.g. Computational Neuroscience) |
| 74 | +# (one domain only & try to be not overly specific) |
| 75 | +domain: Neuroscience |
| 76 | + |
| 77 | +# Coding language (main one only if several) |
| 78 | +language: Python |
| 79 | + |
| 80 | + |
| 81 | +# To be filled by the author(s) after acceptance |
| 82 | +# ----------------------------------------------------------------------------- |
| 83 | + |
| 84 | +# For example, the URL of the GitHub issue where review actually occured |
| 85 | +review: |
| 86 | + - url: https://github.com/ReScience/submissions/issues/54 |
| 87 | + |
| 88 | +contributors: |
| 89 | + - name: Konrad Hinsen |
| 90 | + orcid: 0000-0003-0330-9428 |
| 91 | + role: editor |
| 92 | + - name: Jake Vogel |
| 93 | + orcid: 0000-0001-6394-9940 |
| 94 | + role: reviewer |
| 95 | + - name: Eli Cornblath |
| 96 | + orcid: 0000-0002-2619-8778 |
| 97 | + role: reviewer |
| 98 | + |
| 99 | +# This information will be provided by the editor |
| 100 | +dates: |
| 101 | + - received: April 16, 2021 |
| 102 | + - accepted: September 2, 2021 |
| 103 | + - published: September 2, 2021 |
| 104 | + |
| 105 | +# This information will be provided by the editor |
| 106 | +article: |
| 107 | + - number: 8 # Article number will be automatically assigned during publication |
| 108 | + - doi: 10.5281/zenodo.5379631 # DOI from Zenodo |
| 109 | + - url: https://zenodo.org/record/5379631/files/article.pdf # Final PDF URL (Zenodo or rescience website?) |
| 110 | + |
| 111 | +# This information will be provided by the editor |
| 112 | +journal: |
| 113 | + - name: "ReScience C" |
| 114 | + - issn: 2430-3658 |
| 115 | + - volume: 7 |
| 116 | + - issue: 1 |
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