Fixed journal models with lambda notation

Author: fabriciocravo

docs/example_models/journal_models/BioNetGen_Comparison.py

@@ -8,9 +8,9 @@
 r_link.r_0, r_link.r_1
 R, L, A = New(r_link)
 
-R.r_0 + L.r_0 >> R.r_1 + L.r_1[kon, koff]
+R.r_0 + L.r_0 >> R.r_1 + L.r_1[kon, lambda r: koff*r]
 
-R.a_0 + A.r_0 >> R.a_1 + A.r_1[kAon, kAoff]
+R.a_0 + A.r_0 >> R.a_1 + A.r_1[kAon, lambda r: kAoff*r]
 
 C.assign(A.r_1.n_p - R.a_1.r_0)
 C + A.n_p.r_1 >> C + A.y_p.r_1[lambda c: kAp * c]

docs/example_models/journal_models/PySB_Comparison.py

@@ -3,7 +3,7 @@
 L, R = BaseSpecies()
 
 L_0, R_0, kf, kr = ModelParameters(100, 200, 1e-3, 1e-3)
-Rev[ L.sl_0(L_0) + R.sr_0(R_0) >> L.sl_1 + R.sr_1 ]  [kf, kr]
+Rev[ L.sl_0(L_0) + R.sr_0(R_0) >> L.sl_1 + R.sr_1 ]  [kf, lambda r: kr*r]
 
 S = Simulation(L | R)
 S.run(duration=100, plot_data=False)